CK937530 | Citrus Genome Database

Overview


Name	CK937530
Unique Name	CK937530
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	423

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_PIPCE (Photosystem II reaction center protein K OS=Piper cenocladum GN=psbK PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.594e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            MLNIFSL  ICL+SAL+SSSF FAKLPEAYA  NPIVDVMPVIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSL--ICLSSALHSSSFFFAKLPEAYALFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_OENEH (Photosystem II reaction center protein K OS=Oenothera elata subsp. hookeri GN=psbK PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.791e-21
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            MLNIFSL  ICLNS LYSS F  AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSDLYSSRFFLAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 59

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_AMBTC (Photosystem II reaction center protein K OS=Amborella trichopoda GN=psbK PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.646e-21
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            M NIFSL+ ICL+SAL+SS F FAKLPEAYA  NPIVDVMPVIP+ FFLLAFVWQAA SFR
Sbjct:    1 MPNIFSLICICLHSALHSSGFFFAKLPEAYAVFNPIVDVMPVIPLFFFLLAFVWQAAASFR 61

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_SILLA (Photosystem II reaction center protein K OS=Silene latifolia GN=psbK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.219e-21
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            MLNIFSL  I LNSALYSSS  FAKLPEAYAFL+PIVD MPVIP+LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--IGLNSALYSSSCFFAKLPEAYAFLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_ARATH (Photosystem II reaction center protein K OS=Arabidopsis thaliana GN=psbK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.219e-21
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            MLNIF+L+ I  NS L+SS+FL AKLPEAYAFLNPIVDVMPVIP+ F LLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICIFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSJ (Photosystem II reaction center protein K OS=Oryza sativa subsp. japonica GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSI (Photosystem II reaction center protein K OS=Oryza sativa subsp. indica GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSA (Photosystem II reaction center protein K OS=Oryza sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_ORYNI (Photosystem II reaction center protein K OS=Oryza nivara GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_SECCE (Photosystem II reaction center protein K OS=Secale cereale GN=psbK PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.809e-20
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 1

Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            M NI SL  IC NS LY +SF FAKLPEAYA  NPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

The following BLAST results are available for this feature:

BLAST of CK937530 vs. ExPASy Swiss-Prot

BLAST of CK937530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82


Match Name	E-value	Identity	Description
PSBK_PIPCE	9.594e-22	86.89	Photosystem II reaction center protein K OS=Piper ...	[more]
PSBK_OENEH	2.791e-21	85.25	Photosystem II reaction center protein K OS=Oenoth...	[more]
PSBK_AMBTC	3.646e-21	80.33	Photosystem II reaction center protein K OS=Ambore...	[more]
PSBK_SILLA	6.219e-21	86.89	Photosystem II reaction center protein K OS=Silene...	[more]
PSBK_ARATH	6.219e-21	80.33	Photosystem II reaction center protein K OS=Arabid...	[more]
PSBK_ORYSJ	1.385e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_ORYSI	1.385e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_ORYSA	1.385e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_ORYNI	1.385e-20	78.69	Photosystem II reaction center protein K OS=Oryza ...	[more]
PSBK_SECCE	1.809e-20	77.05	Photosystem II reaction center protein K OS=Secale...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004779_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937530 ID=CK937530; Name=CK937530; organism=Citrus sinensis; type=EST; length=423bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCGAAAAAAAAAAA