CK937530

Overview
NameCK937530
Unique NameCK937530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_ANAVT (Photosystem II reaction center protein K OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  235 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            ++ L AKLPEAY   +P+VDV+P+IPV F LLAFVWQAAV FR
Sbjct:    3 AALLLAKLPEAYQIFDPLVDVLPIIPVFFLLLAFVWQAAVGFR 45
[Close]
BLAST of CK937530 vs. ExPASy Swiss-Prot
Match: PSBK_ANASP (Photosystem II reaction center protein K OS=Anabaena sp. (strain PCC 7120) GN=psbK PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  235 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 363
            ++ L AKLPEAY   +P+VDV+P+IPV F LLAFVWQAAV FR
Sbjct:    3 AALLLAKLPEAYQIFDPLVDVLPIIPVFFLLLAFVWQAAVGFR 45
The following BLAST results are available for this feature:
BLAST of CK937530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PSBK_ANAVT7.619e-1167.44Photosystem II reaction center protein K OS=Anabae... [more]
PSBK_ANASP7.619e-1167.44Photosystem II reaction center protein K OS=Anabae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004779_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937530 ID=CK937530; Name=CK937530; organism=Citrus sinensis; type=EST; length=423bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCGAAAAAAAAAAA
back to top