CK937529

Overview
NameCK937529
Unique NameCK937529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARL 434
            R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKTR   P+G K ++V N K+LE+LMMH +TY AEIA +VS++ R  I+ RA  L I VTN   RL
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTKTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARL 434
            R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKT+   P+G K F+V N K+LE L MH +TY AEIAH++S + R  I+ RA  L I VTN   RL
Sbjct:   19 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARL 434
            R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKT+   P+G K  +V N K+LE L MH ++Y AEIAH+VS++ R  ++ RA  L + VTN   RL
Sbjct:   20 RHHSDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 56/114 (49.12%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R  SDR   VK +WRRP GIDS+VR++ KG   MP+I Y   K+ RH LPNG +K  + N  +L  L   NR YC EIAH V  RKR  IV RA +L I + N  ARL  + +E
Sbjct:   26 RHHSDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            R +  R   + E WRRPKG  S++RRK K    MPN GYGS KK R   P+G+++ +V+N K+LE   +  +   A IA  V  RKR+EI+E+A +L IVV N
Sbjct:   30 RQEWHRYKKLGEKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  150 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHN KELE L    +   A IAH V  +KR EI++RA +L I V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  150 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HN KELE L    R   A IAH V  +KR EI++RA +L I V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELL----MMHNRTYCAEIAHDVSTRKR 371
            R QSDR   V  +WR+PKGID RVRR+F+G   MP IGYGS+KKTR   P+G   F +HN + L       M       AEIA  VS+RKR
Sbjct:   20 RHQSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  150 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HN KELE L    +   A IAH V  +KR EI++RA +L I V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_THEGJ (50S ribosomal protein L32e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  150 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ +VHN KELE +        A IA  V  RKR+ I+ RA +L I V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPRAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIARTVGARKREAIIARAKELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of CK937529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_ASHGO1.664e-2555.5660S ribosomal protein L32 OS=Ashbya gossypii GN=RP... [more]
RL32_YEAST2.838e-2554.6360S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANGA9.128e-2451.8560S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU2.486e-2149.1260S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_METKA4.107e-1645.6350S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_PYRFU1.195e-1548.8950S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO3.477e-1547.7850S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_TRIHA4.541e-1550.5560S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_PYRAB7.746e-1546.6750S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_THEGJ1.461e-1345.5650S ribosomal protein L32e OS=Thermococcus gammato... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937529 ID=CK937529; Name=CK937529; organism=Citrus sinensis; type=EST; length=628bp
GGGGCTCGCGGCCAAGCTGAACCCTAGCTCAAATCACTGGGAAGAAGGTA
AGGAAGATGGCGGTTCCGTTACTGTCGAAGAAGATAGTGAAGAAGAGGCT
GAAGTTCAAGAGGCCTCAGAGCGATCGCAAGATCTCCGTCAAGGAAAATT
GGCGCAGACCAAAGGGTATTGATTCCCGGGTGCGAAGAAAGTTCAAGGGA
TGCACTCTAATGCCCAACATTGGTTATGGTTCGGACAAGAAGACACGCCA
CTATCTTCCAAATGGTTTCAAGAAATTTGTGGTGCACAATACGAAAGAGC
TTGAATTGTTGATGATGCACAACAGGACCTACTGTGCTGAAATTGCCCAT
GATGTTTCCACGAGGAAGAGGAAAGAGATTGTGGAGCGAGCTGCCCAACT
TGATATTGTTGTGACTAACAAGCTTGCTAGATTGAGAAGCCAGGAAGATG
AATGAGATTAAACAATCTGTTCTTTTTAGTAGTAGTGAGTCTTGTTTTGT
ACGCTTTATCAAAATTTTGAAAATTTTGACTTACAAAGATACGACCGTTT
GTGATTTTTTATTTTTTTGGGATGAGTGATAATACAGTAGTTTTTATTTC
ATAGAAAAAAAAAAAAAAAAAAAAAAAA
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