CK937529

Overview
NameCK937529
Unique NameCK937529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_PYRKO (50S ribosomal protein L32e OS=Pyrococcus kodakaraensis GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  150 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHN KELE +        A IA  V  RKR+ I+ RA +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPKAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIAGTVGARKREMILARAKELGVKVLN 125          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_THEON (50S ribosomal protein L32e OS=Thermococcus onnurineus (strain NA1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  150 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ +VHN KELE +        A IA  V  RKR+ I+ RA +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKARSPSIGWSSPRLVRGLHPSGYEEVLVHNVKELEAI--DPARQAARIARTVGARKREMILARAKELGVKVLN 125          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  150 WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 419
            WR+PKG DS++R K KG    P+IG+ S K  R   P+G+++ +V+N K+LEL+   ++   A IA  V  +KR  I+ERA +L I V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  327 TYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            TYCAEIAH+VST+KRKEIVERAAQLDIVV  KLAR  SQEDE
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_SULSO (50S ribosomal protein L32e OS=Sulfolobus solfataricus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/106 (33.02%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  111 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 422
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   KK R + P+G ++ +VHN  EL  +          I+  V  +KR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFYRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKKVRGFHPSGLRQVIVHNVNELVKVQNQKDNVIVTISSSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_SULIY (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  111 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 422
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHN  +L  +     +    IA  V  +KR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_SULIN (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  111 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 422
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHN  +L  +     +    IA  V  +KR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_SULIM (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  111 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 422
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHN  +L  +     +    IA  V  +KR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_SULIL (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  111 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 422
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHN  +L  +     +    IA  V  +KR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_SULIK (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  111 RPQSDR--KISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 422
            R  SD+  ++  +E WRRP G D++ R K +G   + ++GY   K+ R + P+G ++ +VHN  +L  +     +    IA  V  +KR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
The following BLAST results are available for this feature:
BLAST of CK937529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_PYRKO3.254e-1345.5650S ribosomal protein L32e OS=Pyrococcus kodakarae... [more]
RL32_THEON4.250e-1344.4450S ribosomal protein L32e OS=Thermococcus onnurin... [more]
RL32_THESM5.551e-1343.3350S ribosomal protein L32e OS=Thermococcus sibiric... [more]
RL32_MAIZE3.598e-1285.7160S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]
RL32_SULSO3.978e-1133.0250S ribosomal protein L32e OS=Sulfolobus solfatari... [more]
RL32_SULIY8.862e-1132.0850S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIN8.862e-1132.0850S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIM8.862e-1132.0850S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIL8.862e-1132.0850S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIK8.862e-1132.0850S ribosomal protein L32e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937529 ID=CK937529; Name=CK937529; organism=Citrus sinensis; type=EST; length=628bp
GGGGCTCGCGGCCAAGCTGAACCCTAGCTCAAATCACTGGGAAGAAGGTA
AGGAAGATGGCGGTTCCGTTACTGTCGAAGAAGATAGTGAAGAAGAGGCT
GAAGTTCAAGAGGCCTCAGAGCGATCGCAAGATCTCCGTCAAGGAAAATT
GGCGCAGACCAAAGGGTATTGATTCCCGGGTGCGAAGAAAGTTCAAGGGA
TGCACTCTAATGCCCAACATTGGTTATGGTTCGGACAAGAAGACACGCCA
CTATCTTCCAAATGGTTTCAAGAAATTTGTGGTGCACAATACGAAAGAGC
TTGAATTGTTGATGATGCACAACAGGACCTACTGTGCTGAAATTGCCCAT
GATGTTTCCACGAGGAAGAGGAAAGAGATTGTGGAGCGAGCTGCCCAACT
TGATATTGTTGTGACTAACAAGCTTGCTAGATTGAGAAGCCAGGAAGATG
AATGAGATTAAACAATCTGTTCTTTTTAGTAGTAGTGAGTCTTGTTTTGT
ACGCTTTATCAAAATTTTGAAAATTTTGACTTACAAAGATACGACCGTTT
GTGATTTTTTATTTTTTTGGGATGAGTGATAATACAGTAGTTTTTATTTC
ATAGAAAAAAAAAAAAAAAAAAAAAAAA
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