CK937528

Overview
NameCK937528
Unique NameCK937528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 9.467e-12
Identity = 30/76 (39.47%), Postives = 39/76 (51.32%), Query Frame = 3
Query:  204 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVA 395
            RI+KE    LK L  D P +        S  P+ E D+  W+A I GPSD+PY    F + I  P  YP  PPK++
Sbjct:   21 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS 96          

HSP 2 Score: 38.1206 bits (87), Expect = 9.467e-12
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 2
Query:  383 PKGCF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 574
            PK  F +  + H N+ S  G ICL+ILK E+W+P   +   + ++  LL +P  D PL  +I ++ +
Sbjct:   93 PKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 159          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPK-VALGPRSSTRTSTAMEASV 446
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P DYPFKPP  + L P     T+T +  S+
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFETNTKICLSI 96          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.596e-11
Identity = 24/65 (36.92%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  404 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYES 598
            +++HPNI+ +G++CL++L+E W+PAL I  +++ I  L  +PN  DPL  + A     D +++E+
Sbjct:   99 RIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTLIEDPLRFEN 163          

HSP 2 Score: 25.7942 bits (55), Expect = 1.596e-11
Identity = 10/28 (35.71%), Postives = 13/28 (46.43%), Query Frame = 3
Query:  309 PSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            P    YAGG +   +     YP +PP V
Sbjct:   67 PDIGYYAGGTYYFNVFIKDTYPMEPPVV 94          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.608e-11
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 2
Query:  413 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 523
            HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:   81 HPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          

HSP 2 Score: 37.3502 bits (85), Expect = 1.608e-11
Identity = 22/66 (33.33%), Postives = 29/66 (43.94%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV 71          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.608e-11
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 2
Query:  413 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 523
            HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:   81 HPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          

HSP 2 Score: 37.3502 bits (85), Expect = 1.608e-11
Identity = 22/66 (33.33%), Postives = 29/66 (43.94%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF  P+V
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV 71          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.488e-11
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 3
Query:  189 VMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAL 398
            + A+KR+ KE K++  +PP    A P  +++  W   I GP  +PY  G +  T+ FP DYPF PP + +
Sbjct:    4 IQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRM 73          

HSP 2 Score: 23.0978 bits (48), Expect = 4.488e-11
Identity = 13/45 (28.89%), Postives = 22/45 (48.89%), Query Frame = 2
Query:  404 KVFHPN--INSNGSICL---DILKEQWSPALTISKVLLSICSLLT 523
            ++  PN     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:   72 RMITPNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
The following BLAST results are available for this feature:
BLAST of CK937528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
UBCX_YEAST9.467e-1239.47Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBC32_ARATH1.023e-1140.00Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBC12_KLULA1.596e-1136.92NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBE2W_MOUSE1.608e-1159.46Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN1.608e-1159.46Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC6_KLULA4.488e-1137.14Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937528 ID=CK937528; Name=CK937528; organism=Citrus sinensis; type=EST; length=712bp
GGGGGACGATATTTGTGTTGAAGAACAACGAAGCAAGGGGTTGATAGAGG
AGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTT
TCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGGTCTTAA
GGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCATGGCTTCA
AAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTC
TTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAA
TTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACC
ATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTAGG
ACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTGA
TATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGC
TCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGACCCTCTTGTA
CCGGAGATTGCCCACATGTACAAGTCCGACAAGGTCAAATATGAATCCAC
GGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGAT
ATTGCAGAANNNGGAACACATTTATTGAAATATGTTGTGTGNNNTGTCTA
TCTATTTTCTTT
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