CK937528

Overview
NameCK937528
Unique NameCK937528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.074e-26
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  377 QAPKGCFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTARSWTQKYA 628
            + PK  F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + STAR WT+ +A
Sbjct:   65 EPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          

HSP 2 Score: 51.2174 bits (121), Expect = 1.074e-26
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 3
Query:  204 RILKELKDLQKDPPTS-CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            RI KEL+D +++  +S     P ++++     TI GP  +PY GG F + I  P  YPF+PPK+
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKM 69          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.079e-26
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  380 APKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY-----ESTARSWT 616
            AP   F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P   E A +++ +K +Y     E   +SW+
Sbjct:   67 APTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWS 150          

HSP 2 Score: 60.077 bits (144), Expect = 1.079e-26
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            A +R++++ K LQ DPP   S  P+  ++  WQA I GP DS + G  F +++ F  +YP   P V
Sbjct:    5 ARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTV 70          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.824e-26
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY-----ESTARSW 613
            F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K +Y     E+  +SW
Sbjct:   72 FLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          

HSP 2 Score: 65.4698 bits (158), Expect = 1.824e-26
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  DYP KPP V
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHV 70          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.824e-26
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  383 PKGCFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY-----ESTARSWTQ 619
            P   F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  + +Y     E+   SW +
Sbjct:   68 PSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          

HSP 2 Score: 65.855 bits (159), Expect = 1.824e-26
Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            A +R++++ K +Q+D P+  SA P+ +++  W A I+GP+D+P+  G F + + F   YP KPP V
Sbjct:    5 AKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSV 70          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.084e-26
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY 592
            F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y
Sbjct:   72 FLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          

HSP 2 Score: 63.929 bits (154), Expect = 3.084e-26
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            + KR++++ K L  DPP   S  P A+++  W A I GP+D+P+  G F + + F   YP KPP V
Sbjct:    5 SKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTV 70          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.012e-26
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYE 595
            F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ ++ +YE
Sbjct:   72 FISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          

HSP 2 Score: 65.0846 bits (157), Expect = 4.012e-26
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  201 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            +R++++ K LQ+DPP   S  P  +++  W+A I GP ++P+  G F +++ F  +YP KPP V
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTV 70          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.234e-26
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY-----ESTARSW 613
            F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K +Y     E+  +SW
Sbjct:   72 FLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          

HSP 2 Score: 63.929 bits (154), Expect = 5.234e-26
Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP KPP V
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHV 70          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.234e-26
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY-----ESTARSW 613
            F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K +Y     E+  +SW
Sbjct:   72 FLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          

HSP 2 Score: 63.929 bits (154), Expect = 5.234e-26
Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP KPP V
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHV 70          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.249e-26
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            A +R++++ K +Q+DPP   SA PV++++  W A I+GP+D+P+  G F + + F   YP KPP V
Sbjct:    5 ARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLV 70          

HSP 2 Score: 68.5514 bits (166), Expect = 5.249e-26
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKYESTAR 607
            F + +FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E A +++ +K +Y    R
Sbjct:   72 FVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVR 142          
BLAST of CK937528 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.504e-25
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  395 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKVKY-----ESTARSW 613
            F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K +Y     E+  +SW
Sbjct:   72 FLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          

HSP 2 Score: 63.929 bits (154), Expect = 1.504e-25
Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  195 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKV 392
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP KPP V
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHV 70          
The following BLAST results are available for this feature:
BLAST of CK937528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
UBC27_ARATH1.074e-2651.76Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC2_DICDI1.079e-2646.43Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_CANGA1.824e-2642.31Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_DEBHA1.824e-2640.48Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_USTMA3.084e-2646.97Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC1_CAEEL4.012e-2646.27Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_YEAST5.234e-2642.31Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO5.234e-2642.31Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_SCHPO5.249e-2640.91Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_KLULA1.504e-2541.03Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937528 ID=CK937528; Name=CK937528; organism=Citrus sinensis; type=EST; length=712bp
GGGGGACGATATTTGTGTTGAAGAACAACGAAGCAAGGGGTTGATAGAGG
AGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCGCTT
TCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGGTCTTAA
GGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCATGGCTTCA
AAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTC
TTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAAGCAACAA
TTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTTAGTTACC
ATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTAGG
ACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATCTGTCTTGA
TATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGC
TCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGACCCTCTTGTA
CCGGAGATTGCCCACATGTACAAGTCCGACAAGGTCAAATATGAATCCAC
GGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGTTGTTAGGAT
ATTGCAGAANNNGGAACACATTTATTGAAATATGTTGTGTGNNNTGTCTA
TCTATTTTCTTT
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