CK937526

Overview
NameCK937526
Unique NameCK937526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_NEUCR (COP9 signalosome complex subunit 2 OS=Neurospora crassa GN=csn-2 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 109/216 (50.46%), Postives = 152/216 (70.37%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 650
            A+EIQMY+ET                 SA+PHP+I G+IRECGGKMHM+E  W +A +DFFEAF+NYDEAG+ RRIQ LKYL+L  MLM+S++NPFD QE KPY+NDP I AMT L+ AYQR++I  +E +L+ N   ++ DPFI   I+++ +N+RT+ ++KLI PYTR+RI ++++ L + E +V  +L  LI+D R+ G ID+   +LE   R
Sbjct:  202 ALEIQMYSETRNNNQLKVLYQKALKVRSAVPHPKIQGVIRECGGKMHMSEENWKEAQSDFFEAFRNYDEAGDLRRIQVLKYLLLTTMLMKSDINPFDSQEMKPYRNDPRIFAMTELVDAYQRDDIYRYEDVLQKN-TDLLADPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRITEPEVMDILSFLIVDGRVKGRIDEHKGVLELESR 416          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_EMENI (COP9 signalosome complex subunit 2 OS=Emericella nidulans GN=csnB PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.993e-58
Identity = 107/230 (46.52%), Postives = 157/230 (68.26%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWN 692
            A+EIQMY ET                 SA+PHP+IMGIIRECGGKMHM+E  W +A +DFFE+F+NYDEAG+ +RIQ LKYLVL  MLM+S++NPF  QE KPYK DP I AMT+L+ A+QR++I  +E++L  N   ++ DPFI   I+++ +N+RT+ +LKLI PYTR  + FISK + +   + + +L  LILD +++  IDQ +  +   + +  +++  ++++WN
Sbjct:  204 ALEIQMYAETKNNKRLKALYQRALRVRSAVPHPKIMGIIRECGGKMHMSEENWEEAQSDFFESFRNYDEAGSMQRIQVLKYLVLTTMLMKSDINPFHSQETKPYKTDPRISAMTDLVDAFQRDDIHAYEEVLSKN-PDVLADPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTEAQDILSFLILDKKLNAKIDQESGTVV-VESASDVERLRSVEEWN 431          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 57/197 (28.93%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   99 PRIMGIIRECGGKMHMAE-RQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNP---FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 677
            P++   +    G +H AE + W  A + F+EAF+ YD   + + I  LKY++L  +++ +  +      G+ A  Y    +  A+  +  A +   + +FEK L   R  + DDP I  ++  L  N+  Q L+++I+P++R++I  IS  + + + DVE+ L  +ILD +  G +DQ   +L   D     K Y A
Sbjct:  204 PKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 57/197 (28.93%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   99 PRIMGIIRECGGKMHMAE-RQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNP---FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 677
            P++   +    G +H AE + W  A + F+EAF+ YD   + + I  LKY++L  +++ +  +      G+ A  Y    +  A+  +  A +   + +FEK L   R  + DDP I  ++  L  N+  Q L+++I+P++R++I  IS  + + + DVE+ L  +ILD +  G +DQ   +L   D     K Y A
Sbjct:  204 PKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 57/197 (28.93%), Postives = 101/197 (51.27%), Query Frame = 3
Query:   99 PRIMGIIRECGGKMHMAE-RQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNP---FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 677
            P++   +    G +H AE + W  A + F+EAF+ YD   + + I  LKY++L  +++ +  +      G+ A  Y    +  A+  +  A +   + +FEK L   R  + DDP I  ++  L  N+  Q L+++I+P++R++I  IS  + + + DVE+ L  +ILD +  G +DQ   +L   D     K Y A
Sbjct:  204 PKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGR-QTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEA 399          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 48/177 (27.12%), Postives = 99/177 (55.93%), Query Frame = 3
Query:   99 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 620
            P++   I    G +H  E+ +  A + FFE+++ YD   +   ++ LKY++L  ++     +V+   +G+    Y N+  I A+T +  ++ +  +  F+++ K     + DDP I +++ +L  N+  Q L ++I+P++R+ I  I+K +++P   VE+ L  +ILD + +G +DQ
Sbjct:  195 PKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKALKYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQ 371          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: YMJ5_CAEEL (Uncharacterized protein F59B2.5 OS=Caenorhabditis elegans GN=F59B2.5 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 43/184 (23.37%), Postives = 100/184 (54.35%), Query Frame = 3
Query:   84 SAIPHPRIMGIIRECGGKMHMAE-RQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLANMLM---ESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 620
            SA   P++   +    G ++ AE R +  + + F+EAF+ +   G++      LKY++L  +++   E        +E   Y+  P I+A+ ++  A+++  + +F K L  ++  +++D  +  + ++L +N+  + + ++I+PY+ I + +I++ + +    VE+ +  +ILD ++ G IDQ
Sbjct:  243 SAFASPQLQASVDMQSGVLYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQLAGLLAAKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQ 426          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 52/197 (26.40%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   99 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR-IQCLKYLVLANMLMES--EVNPF-DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTA 677
            P + G +    G +H  +  +  A + F+EA++ +    + ++ +  LKY++L+ +++ S  EV     G+ A  Y    +I AM  +  A++   + +FEK L+  +  +  DP IR+++  L  N+  Q LL++++P++R+ +  I++ + +    VE  L  +ILD    G +DQ +  L   D  +  K Y A
Sbjct:  202 PMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGFTSLDDDKKALSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAGR-DIEAMRAIAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEA 397          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 47/172 (27.33%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  132 GKMHMAERQWADAATDFFEAFKNYDEAGN----QRRIQCLKYLVLANM---LMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 626
            G +H  ++ +  A + FFE+F++Y         ++  Q LKY++L+ +   L++   N  + +  K       I AM  +  AY    +++F   LK   K +M D   R++   L   +    L K+I+P+  + I  ISK + +  + VE  L  +ILD    G +DQ N
Sbjct:  223 GILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGN 394          
The following BLAST results are available for this feature:
BLAST of CK937526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CSN2_NEUCR2.839e-5950.46COP9 signalosome complex subunit 2 OS=Neurospora c... [more]
CSN2_EMENI6.993e-5846.52COP9 signalosome complex subunit 2 OS=Emericella n... [more]
PSD11_MOUSE1.576e-1728.9326S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN1.576e-1728.9326S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN1.576e-1728.9326S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_DICDI2.688e-1727.1226S proteasome non-ATPase regulatory subunit 11 OS... [more]
YMJ5_CAEEL2.130e-1423.37Uncharacterized protein F59B2.5 OS=Caenorhabditis ... [more]
RPN6_SCHPO2.782e-1426.40Probable 26S proteasome regulatory subunit rpn6 OS... [more]
RPN6_YEAST7.576e-1227.3326S proteasome regulatory subunit RPN6 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937526 ID=CK937526; Name=CK937526; organism=Citrus sinensis; type=EST; length=698bp
GGGCAATCGAGATTCAAATGTACACTGAAACCAAAAATAACAAGAAGCTA
AAGCAATTATACCAGAAAGCTCTTGCTATCAAGTCAGCCATACCACATCC
AAGGATCATGGGAATAATTCGTGAATGTGGTGGGAAGATGCACATGGCAG
AACGTCAATGGGCAGATGCAGCAACTGATTTCTTTGAAGCATTTAAGAAC
TATGACGAAGCAGGGAACCAGAGGCGTATTCAATGCTTGAAGTATCTGGT
TCTGGCGAATATGCTGATGGAATCTGAAGTGAATCCATTTGATGGACAAG
AGGCAAAGCCATATAAGAATGATCCTGAGATTCTGGCTATGACAAATCTG
ATCGCAGCATACCAAAGAAATGAGATAATAGAGTTTGAAAAAATCCTCAA
GAGCAACAGAAAGACTATCATGGATGATCCATTTATTCGGAATTACATTG
AAGATCTGTTGAAGAATGTCAGGACTCAAGTCTTGCTTAAGCTTATCAAG
CCCTACACAAGGATCCGGATCCCCTTCATATCTAAGGAGCTCAATGTGCC
AGAAAAAGATGTTGAGCAGTTGTTGGTTTCACTTATTCTGGATAATCGAA
TTGACGGACATATTGATCAAGTGAACCGGCTATTAGAGCGAGGAGACAGG
TCAAAGGGAATGAAGAAGTATACTGCCATAGACAAATGGAACTCGCAG
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