CK937524

Overview
NameCK937524
Unique NameCK937524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.402e-45
Identity = 96/162 (59.26%), Postives = 114/162 (70.37%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPGEVT 615
            DP  LQ+ CVA+ + K+GVFVNG+FCKDPKL  ++DFF SGL  PGNT  RLG     AN   IPGLNTLG+   RID+AP G  PPHIHPRASEI LV++G L VGFV+S+  N TL +K L  GDVFV P G + F  NIGKTNA A  A+ SQ PG ++
Sbjct:   26 DPSPLQDYCVAVPE-KNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPAN---IPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYIS 183          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 90/161 (55.90%), Postives = 111/161 (68.94%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPGEV 612
            DP  LQ+ CVA N+  +GV+VNG+FCKDPK     DF+ SGL  PGNT    G   T  +VE++PGLNTLG+   R D+AP G  PPH HPR S+IFLV++G L+VGFV+S++ N TL  K L  GDVFVFP+G IHF  NIG+TNA   SA  SQ PG +
Sbjct:   26 DPSPLQDYCVATNET-NGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRI 185          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 90/161 (55.90%), Postives = 112/161 (69.57%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPGEV 612
            DP  LQ+ CVA ++  + VFVNGKFCKDPK   A DF +SGL    NT N LG + T  +V +IPGLNTLG+S  R+D+A  GQ PPHIHPRA+EI +V +G L VGFV+S+Q NN L  K L +GDVFVFP G IHFQ N+ +T A A++   SQ PG +
Sbjct:   27 DPNPLQDFCVAASET-NRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTI 186          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.111e-42
Identity = 95/164 (57.93%), Postives = 111/164 (67.68%), Query Frame = 1
Query:  127 TDPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            +DP  LQ+ CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +K LNKGDVFVFP+G IHFQFN      A A +AL+SQ PG +T
Sbjct:   24 SDPSPLQDFCVA--DKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAIT 184          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.111e-42
Identity = 95/166 (57.23%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  127 TDPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFF-SGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQL--NNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPGEVT 615
            +DP  LQ+ CVA  D    VFVNG  CK+PK   A DFF    LG PGNT N  G   T   V ++PGLNTLGIS  RID+AP GQ PPH HPRA+EI  VL+GTL VGFVTS+Q    N    K L  GDVFVFPQG IHFQ N G   A A +AL+SQ PG +T
Sbjct:   28 SDPSQLQDFCVA--DKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVIT 191          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.451e-42
Identity = 95/164 (57.93%), Postives = 111/164 (67.68%), Query Frame = 1
Query:  127 TDPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            +DP  LQ+ CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +K LNKGDVFVFP+G IHFQFN      A A +AL+SQ PG +T
Sbjct:   23 SDPSPLQDFCVA--DKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAIT 183          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.451e-42
Identity = 95/164 (57.93%), Postives = 111/164 (67.68%), Query Frame = 1
Query:  127 TDPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            +DP  LQ+ CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +K LNKGDVFVFP+G IHFQFN      A A +AL+SQ PG +T
Sbjct:   23 SDPSPLQDFCVA--DMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAIT 183          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.895e-42
Identity = 97/166 (58.43%), Postives = 119/166 (71.69%), Query Frame = 1
Query:  127 TDPGHLQNVCVA-INDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            +DP  LQ+ CVA +N P   V VNG  CK+P  A A+DFF +  L KP +T N++G + T  NV Q+PGLNTLGIS  R+D+AP G  PPH HPRA+EIF VLEGTLYVGFVTS+  +N L++K LNKGDVFVFP+G IHFQFN      A A +AL+SQ PG +T
Sbjct:   25 SDPSPLQDFCVADLNSP---VRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNP-DNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVIT 186          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.404e-42
Identity = 95/164 (57.93%), Postives = 110/164 (67.07%), Query Frame = 1
Query:  127 TDPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            +DP  LQ+ CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP GQ PPH HPRA+EI  VLEGTL+VGFVTS+  NNTL +K LNKGDVFVFP G IHFQFN      A A +AL+SQ PG +T
Sbjct:   23 SDPSPLQDFCVA--DKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNP-NNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVIT 183          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.228e-41
Identity = 95/164 (57.93%), Postives = 109/164 (66.46%), Query Frame = 1
Query:  127 TDPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            +DP  LQ+ CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP GQ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +K L KGDVFVFP G IHFQFN      A A +AL+SQ PG +T
Sbjct:   24 SDPSPLQDFCVA--DEHSPVLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAIT 184          
The following BLAST results are available for this feature:
BLAST of CK937524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL13_ARATH1.402e-4559.26Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL14_ARATH4.079e-4555.90Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL16_ARATH2.025e-4455.90Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL87_ORYSJ1.111e-4257.93Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL41_ORYSJ1.111e-4257.23Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ1.451e-4257.93Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ1.451e-4257.93Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL82_ORYSJ1.895e-4258.43Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL89_ORYSJ9.404e-4257.93Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL86_ORYSJ1.228e-4157.93Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937524 ID=CK937524; Name=CK937524; organism=Citrus sinensis; type=EST; length=616bp
GGGGGAAATCACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGA
CTTAATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGG
CTTTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGACATCTTCAAAAT
GTCTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAA
GTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAG
GGCTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACA
GATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAAC
ATTCCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACC
CCCGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGT
TTTGTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGATCTAAA
TAAGGGAGATGTTTTTGTGTTTCCACAAGGNNNNATTCACTTCCAATTCA
ACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTC
CCGGGTGAAGTTACCA
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