CK937524

Overview
NameCK937524
Unique NameCK937524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.368e-39
Identity = 87/160 (54.37%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  130 DPGHLQNVCVA-INDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            DP  LQ+VCVA     K  + +NG  CK  +   A DFFF GL K GNT N +G   T A+VE +PGLNT+G+S  RIDYAP+G  PPH HPRA+EI  V+EG+L VGFVT+    N L  + + KG+VFVFP+G +HFQ N G T A A +ALNSQ PG
Sbjct:   24 DPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTT---ANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPG 180          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 86/160 (53.75%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVF-VNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            DP  LQ+VCVA      G   +NG  CK  +   A DFFF GL   GNT N +G   T A+VE++PGLNT+G+S  RIDYAP+G  PPH HPRA+EI  V EGTL VGFVT+    N L  + ++KG+VFVFP+G +HFQ N G T+A A +A NSQ PG
Sbjct:   24 DPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTT---ANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPG 180          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.732e-39
Identity = 89/164 (54.27%), Postives = 109/164 (66.46%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            DP  LQ+ CVA  D K  V VNG  CK+P    ++DFF +     P +T N++G + T+ NV   PGLNTLGIS  RIDYAP G  PPHIHPRA+E+  VLEGTLYVGFVTS+   N L +K ++KGD FVFP+  IHFQ N+     A A S+LNSQ PG +T
Sbjct:   25 DPSPLQDFCVA--DMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNP--NRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVIT 184          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.271e-38
Identity = 89/164 (54.27%), Postives = 109/164 (66.46%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPGEVT 615
            DP  LQ+ CVA  D    V VNG  CK+P    ++DFF +     P NT N++G + T+ NV   PGLNTLGIS  RIDYAP G  PPH+HPRA+E+  VLEGTLYVGFVTS+   N L +K ++KGDVFVFP+  IHFQ N+     A A SAL+SQ PG +T
Sbjct:   25 DPSPLQDFCVA--DMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNP--NRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVIT 184          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.271e-38
Identity = 87/160 (54.37%), Postives = 104/160 (65.00%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTN-AAAYSALNSQFPG 606
            DP  LQ++CVA  D   G+ VNG  CK      A DFFF+G+GKP    N +G   T ANVE+I GLNTLG+S  RIDYAP G  PPH HPRA+E+  VLEG L VGF+T+    N L AK + KG+VFVFP+G IH+Q N  K   A+  SA NSQ PG
Sbjct:   23 DPDTLQDLCVA--DRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITT---ANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPG 177          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.271e-38
Identity = 86/160 (53.75%), Postives = 105/160 (65.62%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANR-LGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            D   LQ+ CVA  D  +G+ VNG  CKDP     EDF+F GL     TAN  +G   T ANVE++PGLNTLG+S  RIDYAP G  PPH+HPRASE   VLEG L+VGF+T+      LI+K +NKGDVFVFP+  +HFQ N  K  A+  +A +SQ PG
Sbjct:   23 DTNMLQDFCVA--DLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTT---TGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPG 177          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.660e-38
Identity = 87/159 (54.72%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            DP  LQ++CVA  D    V VNG  CK       +DF+F GL   GNT N  G   T ANVE++PGLNTLG+S  RIDYAP G  PPH HPRA+E+  VL+GTL VGF+T+    N L  K ++ GDVFVFP+G +HFQ N G T AA  SA NSQ PG
Sbjct:   27 DPDLLQDICVA--DLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITT---ANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPG 178          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.397e-37
Identity = 86/159 (54.09%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            DP  LQ+VCVA  D    V +NG  CK      A+DFFF+GL  PGNT N  G + T ANV+  PG+NTLG+S  RIDYAP GQ PPH HPRA+EI  VLEG L VGF+T+    N L  K +  G+VFVFP+G +HFQ N G   AA  +A NSQ  G
Sbjct:   26 DPDMLQDVCVA--DLASPVKLNGFPCKAN--VTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITT---ANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQG 177          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.131e-37
Identity = 87/159 (54.72%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            D   LQ+VCVA  D    V VNG  CK      A DF    + KPG T N+ G   T ANVEQ+PGLNTLG+S  RIDYAP G  PPH HPRASE+  V+EG L VGF+T+    N L++K + KG+VFVFP+G +HFQ N GK  AA  SA NSQ PG
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITT---ANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPG 185          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.131e-37
Identity = 82/159 (51.57%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            DP  LQ++CVA  D   G  +NG  CK+       DFFF+G+ KP    + +G   T ANVE+IPGLNTL +S  RIDYAP G  PPH HPRA+E+  VLEG L VGF+T+    N L  K +  G+VFVFP+G +HFQ N GK+ A+  SA NSQ PG
Sbjct:   24 DPDALQDLCVA--DKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITT---ANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPG 177          
The following BLAST results are available for this feature:
BLAST of CK937524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL13_ORYSJ4.368e-3954.38Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL32_ORYSJ5.705e-3953.75Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL84_ORYSJ9.732e-3954.27Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL83_ORYSJ1.271e-3854.27Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL24_ARATH1.271e-3854.38Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL23_ARATH1.271e-3853.75Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL52_ORYSJ1.660e-3854.72Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL11_ORYSJ2.397e-3754.09Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
NEC1_NICPL3.131e-3754.72Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL22_ARATH3.131e-3751.57Germin-like protein subfamily 2 member 2 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937524 ID=CK937524; Name=CK937524; organism=Citrus sinensis; type=EST; length=616bp
GGGGGAAATCACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGA
CTTAATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGG
CTTTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGACATCTTCAAAAT
GTCTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAA
GTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAG
GGCTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACA
GATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAAC
ATTCCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACC
CCCGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGT
TTTGTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGATCTAAA
TAAGGGAGATGTTTTTGTGTTTCCACAAGGNNNNATTCACTTCCAATTCA
ACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTC
CCGGGTGAAGTTACCA
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