CK937524

Overview
NameCK937524
Unique NameCK937524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 66/162 (40.74%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  127 TDPGHLQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPGEV 612
            +D   LQ+VC      +  +F+NG FCK P    A DF    L   G+  N +          + PGLNTLGIS  R D A  G   PH HPRASE+  V  G++  GF  +      L  K L +GDVF+FP+G +HF  N G   A  +S LNSQ PG V
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDT---KGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVV 181          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23
Identity = 57/126 (45.24%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  229 AEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            A DF + GL   GNT+N +    T A V Q PG+N LGIS  R+D A  G  P H HP ASE+  V +GT+  GF+TS   +NT+  + L  GD+ VFPQG +H+Q+N G++ A A  A +   PG
Sbjct:   50 AGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPG 173          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 66/155 (42.58%), Postives = 83/155 (53.55%), Query Frame = 1
Query:  142 LQNVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPG 606
            + + CVA N P      +G  CK+     A DF +SGL KPGNT N +    T A V Q PG+  LG++  R+D AP G  P H HP ASEI  V+EGT+   F++S    N +  K L  GDV VFPQG + FQ   GK  A     L  + PG
Sbjct:   24 VNDFCVA-NGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG 173          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 72/166 (43.37%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  130 DPGHLQNVCVAINDPKD--GVF-VNGKFCKDPKLARAEDFFFSGLGKPGNTANRL-GVDET-DANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFV-TSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIG-KTNAAAYSALNSQFPG 606
            DP  L + CVA        G F +NG  C DP LARA+ F  S L +  N A  L G + T  +    +PG N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  TS +L   L    L  G+ FVFP+  +HF +N+     A   S LNSQ PG
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQL----LRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPG 184          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  235 DFF-FSGLGKPGNTANRLGVDE---TDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPGEV 612
            DFF F+G  K  NT++    +    T A + + P LN   +S   + + P    PPH HPR++E+ LV++G L VGF+ +    N L  +DL  GD+FVFP+G +HFQFN G   A A SA  S  PG V
Sbjct:   48 DFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVV 174          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  298 TDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIGKTNAAAYSALNSQFPGEVT 615
            T A + + P LN   +S   + Y P    PPH HPR++E+ L+++G L VGFV +    N L  +DL  GD+FVFP+G +HFQFN G   A A SA  S   G V+
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVS 175          
BLAST of CK937524 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  265 GNTANRLGVDETDANVEQIPGLNTLGISTFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKDLNKGDVFVFPQGXIHFQFNIG-KTNAAAYSALNSQFPGEVT 615
            GN+ +   +  T A   + P L    +S   + +      PPHIHPRASE+ +V++G L VG V + + N T+  + L  GD+FVFP+G +HFQFN G    A A+SA  S  PG ++
Sbjct:   58 GNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTIS 174          
The following BLAST results are available for this feature:
BLAST of CK937524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL111_ORYSJ2.327e-2440.74Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL814_ORYSJ1.970e-2345.24Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI2.178e-2242.58Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL31_ORYSJ1.844e-2143.37Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL92_ORYSJ5.021e-1941.54Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ4.700e-1743.40Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ1.512e-1538.98Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937524 ID=CK937524; Name=CK937524; organism=Citrus sinensis; type=EST; length=616bp
GGGGGAAATCACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGA
CTTAATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGG
CTTTGGCTTCTTCTTTGGCCTCTGCCACTGACCCTGGACATCTTCAAAAT
GTCTGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAA
GTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAG
GGCTAGGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACA
GATGCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAAC
ATTCCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACC
CCCGTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGT
TTTGTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGATCTAAA
TAAGGGAGATGTTTTTGTGTTTCCACAAGGNNNNATTCACTTCCAATTCA
ACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTC
CCGGGTGAAGTTACCA
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