CK937523

Overview
NameCK937523
Unique NameCK937523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1
Query:  115 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHLATASA 465
            AAEEGQVIGCHT + W  QL K+ E+ +L+V+DFTASWC PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VGA KE+L   I KH    +A
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.208e-35
Identity = 68/116 (58.62%), Postives = 91/116 (78.45%), Query Frame = 1
Query:  118 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHLATASA 465
            A EG+VI CHTVE W E+L+ +NE+K+L+V+DFTA+WC PCRFIAP  A+LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVGA KEE+   + KH    +A
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  103 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHLA 453
            A  AA   G+VI  H++E W  Q++++N  K+LVV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   10 ATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  109 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHLATASA 465
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE+   + KH   A+A
Sbjct:    1 MAATAELIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  109 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHLATASA 465
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE+   + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  109 MAAAEE----GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHLATASA 465
            MAA  E    G+VI CHTVE WN +L+ + E+ +L+V+DFTA WC PCRFIAP   ELAKK  +V+F KVDVDEL +VA ++ V+AMPTF+++K  + +DKVVGA KEE+   + KH   A+A
Sbjct:    1 MAATAEVIPAGEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 123          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 43/97 (44.33%), Postives = 70/97 (72.16%), Query Frame = 1
Query:  148 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTI 438
            T E W+++L +++   ++V+ +F+A WCGPC+ IAP+  EL++  P+++FL +DVDEL   +  W ++A PTF FL++G+ VDK+VGA K EL + I
Sbjct:   31 TKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 43/97 (44.33%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  148 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTI 438
            T E+W+++L +++   ++VV +F+A+WCGPC+ +APF  EL++K  +++FL VDVDEL   ++ W ++A PTF FLK G+ + K+VGA K EL + +
Sbjct:   30 TKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 47/109 (43.12%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  118 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAK 444
            +E  +V+   +   W     +  E+ +L+VVDF+ASWCGPCR I P +  +A K  +V F+K+DVDEL  VA ++ V AMPTF+ +K GK +++++GAKK+EL + ++K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.368e-20
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  157 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTI 438
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ VD+  GA KE+L  TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CK937523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
TRXH4_ARATH2.134e-3559.32Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH6.208e-3558.62Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT4.024e-3457.26Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_BRARA2.441e-3154.47Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL2.441e-3154.47Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA2.441e-3154.47Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_POPJC1.028e-2144.33Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
TRXH9_ARATH1.028e-2144.33Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_ARATH1.754e-2143.12Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_HORSE7.368e-2051.06Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937523 ID=CK937523; Name=CK937523; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGGAAAGANNNCCCATACGCAAATCACCNNNAGCAAGAAAGCGAGG
GAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGA
AAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACC
GTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCT
GGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTG
CTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTG
AAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGA
GGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGG
TGGTTGGAGCAAAGAAAGAGGAACTGTGGCAGACTATTGCCAAGCATCTG
GCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTT
TAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTA
GAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTT
ACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATA
TTTGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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