CK937523

Overview
NameCK937523
Unique NameCK937523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  163 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELWQTIAKHL 450
            NE LQ    +++LV+VDF A WCGPCR I P L E+AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+GA  K  L  TI K+L
Sbjct:   11 NEVLQ----SEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  133 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIA 441
            VI   + + W   + KS      + VD  A WCGPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPTF+F + GK +D + GA  + L + +A
Sbjct:    3 VIEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  202 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 426
            +V+DF A+WCGPC+ + P L +L +  P+V F+K DVDE   +A +  V AMPTF+  K+G+++ K++GA    L
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTAL 120          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  199 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELWQTIAKH 447
            LV+VDF A WCGPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  136 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 411
            +G   +++  E  +K  +    VVVDF A+WCGPC+ IAP L +L++    + F KVDVDEL  VA    V AMPTF F K G+  ++V GA
Sbjct:    1 MGVTPIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGA 92          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  190 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELWQTIAKHL 450
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  175 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELWQTIAKHL 450
            Q+  E+   V+VDF A WCGPCR +AP + E+A++  + V  +KV+ DE  SVA+ + + ++PT M  K+G+ VD VVGA  K  L  T+ KHL
Sbjct:   14 QEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  163 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV------------DKVVGAKKEELWQTIAKHLATA 459
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V             + +GA  E+L     K +A A
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEKLGGLAQKRVAGA 121          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  175 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHLA 453
            +K    K  VVVD  A+WCGPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVGA    L   I   LA
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKALLA 110          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  199 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELWQTIAKH 447
            LV+VDF A WCGPCR + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
The following BLAST results are available for this feature:
BLAST of CK937523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIO_CYAME3.542e-1445.36Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
TXL1_SCHPO4.626e-1438.10Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
TRX3_YEAST4.626e-1444.00Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_CHLMU4.626e-1445.24Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_PENCH6.041e-1444.57Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_CYACA7.890e-1441.57Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO1_SYNE77.890e-1444.68Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_FUSCU1.030e-1341.23Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_EMENI1.030e-1343.01Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_CHLPN1.030e-1346.43Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937523 ID=CK937523; Name=CK937523; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGGAAAGANNNCCCATACGCAAATCACCNNNAGCAAGAAAGCGAGG
GAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGA
AAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACC
GTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCT
GGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTG
CTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTG
AAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGA
GGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGG
TGGTTGGAGCAAAGAAAGAGGAACTGTGGCAGACTATTGCCAAGCATCTG
GCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTT
TAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTA
GAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTT
ACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATA
TTTGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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