CK937523

Overview
NameCK937523
Unique NameCK937523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHL 450
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHL 450
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHL 450
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  103 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAK 444
            AE+   EEG V      E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  GA   +L ++I++
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  205 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELWQTIAKHL 450
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  199 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELWQTIAKH 447
            LV++DF A WCGPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTIAKHL 450
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  202 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 426
            VV+D    WCGPC+ IAP   EL++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V GAK ++L
Sbjct:   97 VVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDL 172          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  196 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELWQTI 438
            ++VV+D    WCGPC+ IAP   EL++K  +++FLK+D + + K +A +  +  +PTF  LK+ K+V +V GAK E+L   I
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of CK937523 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   94 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSN--ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELWQTIAKHL 450
            PR++ +  AE G V         N+   K+   E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT M  K GK  + ++GA  K  + QT+ K+L
Sbjct:   26 PRRSVVVRAEAGAV---------NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
The following BLAST results are available for this feature:
BLAST of CK937523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIOM_RAT5.114e-1342.86Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE5.114e-1342.86Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN5.114e-1342.86Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
TXND2_MOUSE6.679e-1335.96Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO_STAHJ6.679e-1348.81Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_CHLCV6.679e-1341.67Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIOM_BOVIN6.679e-1342.86Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXF_PEA1.139e-1246.05Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRXF2_ARATH2.538e-1241.46Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_CHLRE4.329e-1235.77Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937523 ID=CK937523; Name=CK937523; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGGAAAGANNNCCCATACGCAAATCACCNNNAGCAAGAAAGCGAGG
GAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGA
AAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACC
GTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCT
GGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTG
CTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTG
AAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGA
GGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGG
TGGTTGGAGCAAAGAAAGAGGAACTGTGGCAGACTATTGCCAAGCATCTG
GCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTT
TAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTA
GAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTT
ACTGTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATA
TTTGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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