CK937501

Overview
NameCK937501
Unique NameCK937501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.315e-41
Identity = 91/166 (54.82%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRA----TSGVDDDLK----AWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXXXXXXXNQWAFE 613
            +S KI L SSDGE+F+V+E VA + Q +KH++EDDC  N IPL NVT  ILS V+EYCKKHV+    DD +        DD+ K    AWD +F+K +D  T+F LILAANYLN++ LL LTCQTVAD IK KTPEE+R+ FNI+NDFT           N WAFE
Sbjct:    2 SSNKIVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CK937501 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of CK937501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK15_ARATH3.315e-4154.82SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA7.384e-4155.97S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT7.384e-4155.97S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB7.384e-4155.97S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE7.384e-4155.97S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA7.384e-4155.97S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN7.384e-4155.97S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK7.384e-4155.97S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO7.384e-4155.97S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN7.384e-4155.97S-phase kinase-associated protein 1 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_H02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937501 ID=CK937501; Name=CK937501; organism=Citrus sinensis; type=EST; length=793bp
GGGGGTCCGTTCCGAGAACAGACACCTTTTCGAAGGGCTTTTCTTCTCTT
CTCTTCATCTTTATCCTCCTTTTATATATAAATATAATAAATATCAAGAA
AGTTAGGGTTTCAAGAGTGTGTTGGATCGATCGATCAGAATGTCAACGAG
TAAGAAAATCACGCTGAAGAGCTCGGATGGAGAGGCGTTCGAGGTCGATG
AAGCAGTGGCGTTGGAATCGCAGACGATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACGTCGAGGCATCTAAGTCCGACG
ATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGAT
TTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAAA
CTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCAG
ACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAATATC
AAGAACGACTTTACCCCAGAAGAGGAGGAAGAGGTTCGTCGGGAGAATCA
GTGGGCTTTTGAGTGAAAGGATCTCAAATGACCAATTTGTAATTGTGTCT
TTTCTTTTTTGTTTTGCCTTCTTTTTGTTGTTGCTGCTGACTCAAATGTC
TTTAGCTGGTAAAAGCATCAAACCANNNNTGTTTTAATGTCATATCATCC
CAACCTTCTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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