CK937499

Overview
NameCK937499
Unique NameCK937499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: S14L1_HUMAN (SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.321e-13
Identity = 43/124 (34.68%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  424 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            +LRFL+AR F+IDKA+ +  + L WRK+  VD I+E +   ++  +  YY  G+H  DK+GRP+++ RLG++D+  L++    +  +RY +   E+    +    T    R I S T ++D++G
Sbjct:  280 ILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPPQV--LQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSVNEERLR-RCEENTKVFGRPISSWTCLVDLEG 400          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: S14L5_XENTR (SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  424 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            +LRFL+AR F+++KA+ M  + L WRK+  VD I++ ++   + E   YY  G+H  DK+GRP++I RLG+VD+  L++    +  +R HV    +    +    T    R I S T ++D++G
Sbjct:  276 ILRFLRARDFNMEKAREMLCQSLSWRKQHQVDYILQTWQPPRVLE--EYYAGGWHYHDKDGRPLYILRLGQVDTKGLVKALGEEAILR-HVLSINEEGQKRCEENTRQFGRPIWSWTCLVDLEG 396          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.565e-13
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIR 687
            ER   Y  +LRFL AR + + +A  M  + LQWRKE  +D+++E  E+ E   V+ ++P G+H  DK+GRP++I RLG +D   L++   M+  +R
Sbjct:  237 ERVPSYQTILRFLSARDWHVSQAFAMLCDSLQWRKEHRMDSLLE--EYTEPAVVVEHFPGGWHHHDKDGRPIYILRLGHMDVKGLLKSLGMEGLLR 330          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: S14L5_HUMAN (SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.119e-12
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  424 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            +LRFL+A  F +DKA+ M  + L WRK+  VD +++ ++   + E   +Y  G+H  D +GRP++I RLG++D+  LM+    +  +R HV    +    +    T    R I S T +LD++G
Sbjct:  267 ILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPALLE--EFYAGGWHYQDIDGRPLYILRLGQMDTKGLMKAVGEEALLR-HVLSVNEEGQKRCEGSTRQLGRPISSWTCLLDLEG 387          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIR 687
            ER   Y  +LRFL AR + + +A  M  + L+WR+E  +D ++ ++    +  V+ ++P G+H +DK+GRPV+I RLG +D   L++   MD  +R
Sbjct:  239 ERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAV--VVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLR 332          
The following BLAST results are available for this feature:
BLAST of CK937499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
S14L1_HUMAN1.321e-1334.68SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE... [more]
S14L5_XENTR2.944e-1335.48SEC14-like protein 5 OS=Xenopus tropicalis GN=sec1... [more]
RETM_DROPS8.565e-1339.58Protein real-time OS=Drosophila pseudoobscura pseu... [more]
S14L5_HUMAN1.119e-1233.87SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE... [more]
RETM_DROME3.255e-1236.46Protein real-time OS=Drosophila melanogaster GN=re... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_G12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937499 ID=CK937499; Name=CK937499; organism=Citrus sinensis; type=EST; length=795bp
GGGGGATCGATCGATCGATTGTTTGACCGATCCATTCATTGCTGAAAGCG
CAGAGTGTCAGTGCCGCGTTTCCCTCTCACGCGCCACCGAGAGATGTCGG
GTCCTCTCGATCGGTTCGCTAGGCCTTGTTTTGAGGGATTCTCAGGAAGT
GATGAGAGGAGAGAAAGGAAATCTGATTTTGAGAACTCTGAGGATGAAAG
GCGGACAAGGATTGGGTCTCTGAAGAAGAAAGCCTTAAATGCATCCACTA
AGTTCAAGCATTCTCTGAAGAAAAAGAGCAGTAGAAGGAAAAGTGATGGC
CGGGTCAGCTCTGTTTCAATTGAGGATGTCCGTGATGTTGAGGAGCTTCA
GGCTGTTGATGCATTTAGACAATCATTAATTATGGATGAATTGCTGCCTG
AGCGACATGATGATTATCACATGATGTTAAGGTTCTTAAAAGCTAGGAAG
TTTGATATTGACAAAGCAAAGCATATGTGGGCCGAGATGCTTCAATGGAG
GAAGGAATTCGGTGTTGACACTATTATGGAGGATTTTGAGTTCAAAGAAA
TAAATGAAGTTTTGAGTTATTACCCTCATGGTTACCATGGTGTGGACAAG
GAGGGAAGACCTGTTCACATTGAAAGATTGGGAAAAGTTGATTCTAACAA
ACTTATGCAAGTTACCACTATGGATCGATATATAAGGTATCATGTTCAAG
GATTTGAAAAAGCCTTTGCAGTAAAGTTTCCAGCTTGTACANNNGCTGCA
AAGAGGCACATTGATTCGAGCACTTCAATTTTAGATGTTCAAGGC
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