CK937496

Overview
NameCK937496
Unique NameCK937496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.813e-38
Identity = 81/114 (71.05%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 510
            K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   13 KAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.813e-38
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 495
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH  LLPKK G
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.813e-38
Identity = 82/111 (73.87%), Postives = 86/111 (77.48%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 495
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH  LLPKK G
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 81/114 (71.05%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 510
            K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   13 KAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 82/114 (71.93%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH  LLPKK G  K
Sbjct:   13 AKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSK 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 81/114 (71.05%), Postives = 87/114 (76.32%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 510
            K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   13 KAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A4_VOLCA2.813e-3871.05Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A3_ORYSJ2.813e-3873.87Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI2.813e-3873.87Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A_CHLRE3.674e-3871.05Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A7_WHEAT3.674e-3871.93Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A7_ORYSJ3.674e-3871.93Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI3.674e-3871.93Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A3_VOLCA3.674e-3871.05Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A1_ORYSJ3.674e-3871.93Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]
H2A1_ORYSI3.674e-3871.93Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bp
GCGGGGATTCNNNAAAAATACTCAAAAGCAATNNNACCGATCTTTTTTGT
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAGGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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