CK937496 | Citrus Genome Database

Overview


Name	CK937496
Unique Name	CK937496
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	609

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 69/107 (64.49%), Postives = 77/107 (71.96%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            KSV+RS +AGLQFPVGR+ RFLK G+YA+RVG GAP                  GNAARDNKKNRI PRH+ LAVRNDEEL KLL  VTIA GGVLPNI+  LLPK+
Sbjct:   22 KSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ +RS +AGLQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ +RS +AGLQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ +RS +AGLQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ +RS +AGLQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ +RS +AGLQFPVGR+ R L+ G Y+ERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.419e-31
Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 528
            KSV+RS KAGLQFPVGRI R+LK G+YA+RVG+GAP                  GNAA+DNKK+RIVPRH+ LAVRND+EL +LL  VTIA+GGV+PNI+  LLPKK  +     G+ ++
Sbjct:   20 KSVTRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKAAEKAEKAGTKAK 139

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 9.690e-31
Identity = 69/111 (62.16%), Postives = 78/111 (70.27%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ SRS +AGLQFPVGRI R L+ G YA RVGAGAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   12 AKAKSRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 9.690e-31
Identity = 68/108 (62.96%), Postives = 76/108 (70.37%), Query Frame = 1

Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489
            +K+ SRS +AGLQFPVGRI R L+ G Y ERVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK
Sbjct:   12 AKAKSRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 119

[Close]

BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 69/110 (62.73%), Postives = 78/110 (70.91%), Query Frame = 1

Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K VSRS K+GLQFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL  LL  VTIA+GGVLPNI+  LLPKK  K
Sbjct:   23 KPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEK 132

The following BLAST results are available for this feature:

BLAST of CK937496 vs. ExPASy Swiss-Prot

BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239


Match Name	E-value	Identity	Description
H2A1_PEA	5.681e-31	64.49	Histone H2A.1 OS=Pisum sativum PE=2 SV=1	[more]
H2A1_MOUSE	5.681e-31	62.04	Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE...	[more]
H2A1K_MOUSE	5.681e-31	62.04	Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ...	[more]
H2A1H_MOUSE	5.681e-31	62.04	Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ...	[more]
H2A1F_MOUSE	5.681e-31	62.04	Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ...	[more]
H2A1B_HUMAN	5.681e-31	62.04	Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2A...	[more]
H2A3_WHEAT	7.419e-31	56.67	Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1	[more]
H2A_MYTTR	9.690e-31	62.16	Histone H2A OS=Mytilus trossulus PE=3 SV=3	[more]
H2A_CHITH	9.690e-31	62.96	Histone H2A OS=Chironomus thummi thummi PE=3 SV=2	[more]
H2A4_ARATH	1.266e-30	62.73	Probable histone H2A.4 OS=Arabidopsis thaliana GN=...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004780_A06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bp
GCGGGGATTCNNNAAAAATACTCAAAAGCAATNNNACCGATCTTTTTTGT
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAGGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA