CK937496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.742e-16 Identity = 53/111 (47.75%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 178 SRSHKAGLQFPVGRIARFLKA-GKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKG 507 S S KAGLQFP GRI R L+ + R+GA A GNAA+D K RI PRH+QLA+R DEEL L+ TIA GGVLP+I++ LL K K KG Sbjct: 25 SHSAKAGLQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKG 134
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.805e-16 Identity = 54/111 (48.65%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 178 SRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKG 507 S S KAGLQFP G + RFLK + RVGA A GNAA+D K RI PRH+QLA+R DEEL L+ TIA GGVLP I++ LL K K KG Sbjct: 25 SHSAKAGLQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKKG 134
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14 Identity = 49/121 (40.50%), Postives = 61/121 (50.41%), Query Frame = 1 Query: 166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 528 SK SRS +AG+ FPV R+ R L+ G++A RV + AP N +KK RI P+HI AV ND EL+ L VTIA GGVLP Q+ KK K +SQ Sbjct: 32 SKPESRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKKPSKKAAEGSSQ 152
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13 Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA-GAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498 KS S+S K GL FPVGR+ ++ G+YA R+GA GA AA+ KK R+ PR + LA R+D+++ LL +VT+++ GV+PNI + + KK GK Sbjct: 13 KSGSKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKKKGGK 124
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13 Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 1 Query: 160 KASKSVS--RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN--RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 504 KASK S RS KAGL FPVGR+ L+ G+YA R+GA AA K R+ PR + LAVR+D++L LL VT++ GGV+P++++ L K K Sbjct: 10 KASKKRSGGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKK 128
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13 Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 1 Query: 163 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA-GAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498 A KS S+S K GL FPVGR+ ++ G+YA R+GA GA AA+ KK R+ PR + LA R+D+++ LL +VT+++ GV+P++ + + KK GK Sbjct: 11 ARKSGSKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKKGGK 124
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12 Identity = 43/108 (39.81%), Postives = 55/108 (50.93%), Query Frame = 1 Query: 166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 489 S+ RS KA LQF V R+ LK G+Y R+GA AP N +K+ I PRHI LAVRND E++KL VTI+ GV+P + L +K Sbjct: 13 SRRKLRSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12 Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 265 AGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 465 AGAP XXX X GNAARDNKK+RI+PRH+QLAV L+KLLG+VTIA GGVLPNI Sbjct: 1 AGAPVYLAAXXXYLTAEILXLAGNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12 Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 1 Query: 178 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL--PKKMG 495 SRS +A L FPV RI + ++ G++ +R + AP A K RI P+HI L++ D EL+ LL +VTIANGGV IH LL PKK G Sbjct: 132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKKG 239 The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bpback to top |