CK937496

Overview
NameCK937496
Unique NameCK937496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_DEBHA (Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 74/120 (61.67%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  172 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            S SRS KAGL FPVGR+ R L+ G YA+RVG+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G+ASQE
Sbjct:   15 STSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAKKAKA----GNASQE 130          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.558e-33
Identity = 73/120 (60.83%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  172 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP                  GNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G+ASQE
Sbjct:   15 STSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQSLLPAKKAKA----GAASQE 130          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 4.647e-33
Identity = 75/118 (63.56%), Postives = 82/118 (69.49%), Query Frame = 1
Query:  178 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K  G    ASQE
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKTAGG-KPASQE 135          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.647e-33
Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  160 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K +KS +RS +AGLQFPVGR+ RFLK G Y  RVGAGAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   10 KGTKSKTRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.069e-33
Identity = 71/111 (63.96%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK GK
Sbjct:   12 TKAKSRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGK 122          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.069e-33
Identity = 73/110 (66.36%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  169 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 498
            K VSRS KAGLQFPVGRI RFLK G+YA+RVG+GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK  K
Sbjct:   22 KPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEK 131          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 6.069e-33
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 1
Query:  166 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            +K+ +RS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK G+     G + ++
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQAAASSGKSGKK 134          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33
Identity = 73/111 (65.77%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  178 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 507
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_EMENI (Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33
Identity = 73/111 (65.77%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  178 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 507
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKAGKG 128          
BLAST of CK937496 vs. ExPASy Swiss-Prot
Match: H2A_ASPOR (Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33
Identity = 73/111 (65.77%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  178 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 507
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128          
The following BLAST results are available for this feature:
BLAST of CK937496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A2_DEBHA3.558e-3361.67Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=... [more]
H2A2_CANAL3.558e-3360.83Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=... [more]
H2A_BOTFB4.647e-3363.56Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2A1_PSAMI4.647e-3363.72Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A_PARLI6.069e-3363.96Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_EUPES6.069e-3366.36Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2AX_DANRE6.069e-3358.20Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2A_NEOFI7.927e-3365.77Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]
H2A_EMENI7.927e-3365.77Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV... [more]
H2A_ASPOR7.927e-3365.77Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_A06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937496 ID=CK937496; Name=CK937496; organism=Citrus sinensis; type=EST; length=609bp
GCGGGGATTCNNNAAAAATACTCAAAAGCAATNNNACCGATCTTTTTTGT
GGCTTCACTTTCAATCGCTTCAAACCAAACCGAAATCTAGGGTTAGGGTT
TTTCTGTAATAAGAATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGG
GGTAAGCCGAAGGCTTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCT
TCAGTTCCCGGTGGGCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACG
CTGAGCGAGTCGGCGCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAG
TACCTCGCTGCTGAGGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAA
CAAGAAGAACCGTATAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATG
ATGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGT
GTTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGG
AAAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTC
AGAATTTTACTAGTATCTGTAAAAAAGGACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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