CK937473

Overview
NameCK937473
Unique NameCK937473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34
Identity = 80/191 (41.88%), Postives = 114/191 (59.69%), Query Frame = 2
Query:  104 MVNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF--ANNLSSQLVEQTTFLDDATVKRLKA 661
            M+ D CVAD K    P    G PC     VTA+DF F GL  AGNTT+ + + VT A V + P +N +G+S+AR+D A  G+ P HTHP A+EI+ V  G +  GF+ ++AN ++ +T+ KG++ +FP+GL+HFQ NSG   AL   +FNS  PG Q     LF  A  L S  + +   +D   V+ +K+
Sbjct:   27 MLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFV-TTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIKS 216          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 2
Query:  104 MVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGF-ISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLKA 661
            ++ DFCV D        G+PC     V A DF FSGL +AGNTT+   + VT   VAQ P +N +G+SL R+D A  G+ P HTHP A+EI  V+ G +  GF IS+  N ++ K L KGD+ +FPQGL+HFQ N+G + A+   + +S NPG+     A+F +  ++S  ++ +   +D   + R++A
Sbjct:   33 LLQDFCVVDKMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQA 221          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 75/190 (39.47%), Postives = 114/190 (60.00%), Query Frame = 2
Query:  101 AMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSS-ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + + DFCVAD        G+ C  PA +T +DF FSGL +AGNT++   +AVT   VAQ   +N LG+SLAR+D A  G+ P H HP A+EIL ++ G +  GF++S+  N ++ K L KGD+ +FPQGL+HFQ N G    +   + +S NPG+     A+F +   +S  ++ +   ++   V R++A
Sbjct:   25 SQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQA 214          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 80/187 (42.78%), Postives = 115/187 (61.50%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCV DLK S S  G+PC   + V+A DF FSGLG   NT++    AV+PA V  FP +N LGLS+  ++ A GGV P H+HP A+E  +V+ G V  GF++++ NT++ K L  G++ + P+GL+HFQ N G   A    SFNS  PG  +    LF +N  + + ++ +T   DD TV +LK+
Sbjct:   33 LQDFCVGDLKASPSINGFPC--KSSVSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTN-NTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLKS 216          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 74/162 (45.68%), Postives = 101/162 (62.35%), Query Frame = 2
Query:  104 MVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 589
            ++ D CVADL  +    G+ C   A VT DDF F GL  AGNT +   + VT A V + P +N LG+S++R+D A GG+ P HTHP A+E++ V+ G +  GFI ++AN +Y KT+  GD+ +FP+GLLHFQ N+G   A    +FNS  PG Q     LFA
Sbjct:   30 LLQDICVADLTSAVKVNGFAC--KAAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFI-TTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFA 188          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.456e-32
Identity = 75/188 (39.89%), Postives = 115/188 (61.17%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSS-ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLKA 661
            + D CVAD   +    G  C     V A+DF FSGL +AGNTT+   +AVT   VAQ P +N LG+SLAR+D A  G+ P HTHP A+EIL V+ G +  GF++S+  N ++ K + KGD+ +FP+GL+HFQ N G   A+  V+ +S NPG+     A+F +  +++  ++ +   ++   V +++A
Sbjct:   34 LQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQVEKTVVDQIQA 221          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.456e-32
Identity = 78/191 (40.84%), Postives = 113/191 (59.16%), Query Frame = 2
Query:  104 MVNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF--ANNLSSQLVEQTTFLDDATVKRLKA 661
            M+ D CVAD K    P    G+PC     VTA+DF F GL  AGNT + + + VT A V   P +N +G+S+AR+D A  G+ P HTHP A+EI+ VV G +  GF+ ++AN ++ +T+ KG++ +FP+GL+HFQ N+G   A    + NS  PG Q    ALF  A  L S  + +   +D   V+ +K+
Sbjct:   27 MLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFV-TTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKS 216          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 81/194 (41.75%), Postives = 118/194 (60.82%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPA-GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPG-LQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILG 670
            + DFCVA  + +     G  C  P  VTA+DF +SGL +A NTT+ + + VT   V + P +N LG+SLARLD A+GG  P H HP A+EIL+V  G +  GF+SS+   N ++ K LK+GD+ +FP GL+HFQ+N     A+ F  F S NPG ++I D A+F +N  +  +++ +   LD   V+ L  + G
Sbjct:   31 LQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIAD-AVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVFG 223          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 76/162 (46.91%), Postives = 99/162 (61.11%), Query Frame = 2
Query:  104 MVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 589
            M+ D CVADL       G+PC   A VTADDF F+GL   GNT +   + VT A V  FP VN LG+S+AR+D A GG  P HTHP A+EI+ V+ G +  GFI ++AN ++ KT+  G++ +FP+GL+HFQ N G   A    +FNS   G Q     LFA
Sbjct:   29 MLQDVCVADLASPVKLNGFPC--KANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFI-TTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFA 187          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.436e-32
Identity = 83/191 (43.46%), Postives = 111/191 (58.12%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLG--VAGNTTSIINAAVTPAFVAQ---FPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANT-VYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD        G PC  PA VTADDF FSG+G   AG       A+    F A+    P +N LG S AR+D+A GGV P H HP ASE  +V+ G V  GF++S  ++ V  K L++GD+   PQGL+HF  N+G++ A  + S +S NPGL +   AL A  L   LV +T   D+ATV +++A
Sbjct:   34 LQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGA-TASRRYGFTARSVDIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAAPLPVDLVAKTLLTDEATVDKIRA 223          
The following BLAST results are available for this feature:
BLAST of CK937473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL32_ORYSJ4.525e-3441.88Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL22_ORYSJ5.910e-3440.21Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL21_ORYSJ1.720e-3339.47Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GLT2_ARATH2.933e-3342.78Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL52_ORYSJ2.933e-3345.68Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL23_ORYSJ1.456e-3239.89Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL13_ORYSJ1.456e-3240.84Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL16_ARATH5.532e-3241.75Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL11_ORYSJ5.532e-3246.91Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL51_ORYSJ9.436e-3243.46Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_C10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937473 ID=CK937473; Name=CK937473; organism=Citrus sinensis; type=EST; length=738bp
GCGGGGATAGCCATTATCATCAAAATANNNACACTAAATATTAGTCAAAA
TGCTTCACATTCTCTTCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAAT
GCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTCC
CGCCGGCTATCCTTGCGTGCCCCCCGCTATGGTTACCGCTGACGACTTCG
TATTTTCGGGCCTCGGCGTGGCCGGAAACACCACGAGCATTATCAACGCG
GCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTGAATGGGCTCGG
ACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCC
ACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCGTA
ACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCT
TAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAG
TAAATTCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCG
AATCCTGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTC
TTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGA
GGCTCAAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACAT
TCTTCATTNNNAGTTNNNAGTTCTTAATTTCATTTAGT
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