CK937473

Overview
NameCK937473
Unique NameCK937473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.036e-26
Identity = 63/164 (38.41%), Postives = 98/164 (59.76%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 592
            + DFCVAD+       G+PC  P  VT+DDF  +    +  NT + + + VT   V  FP +N LG+SLAR+D A  GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD+ +FP+ ++HFQ+N   +  A+   + +S NPG+     A+F +
Sbjct:   29 LQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGS 192          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.036e-26
Identity = 71/195 (36.41%), Postives = 107/195 (54.87%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAA-VTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 673
            + DFCVADL    +  G+ C  PA    D+F+FS  +   G+  +  N + VT   VA++P VN LG+S+ R+D A GG  P H HP A+E+ +V+ G +  G I +    N  Y K ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK+   G
Sbjct:   34 LQDFCVADLDSKVTVNGHAC-KPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSKFTG 227          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.473e-26
Identity = 69/189 (36.51%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD+       G+ C+ P  V AD F  +        T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FPQGL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+A
Sbjct:   28 LQDFCVADMHSPVRVNGFACLNPMEVNADHFFKAAKLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQA 216          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 592
            + DFCVAD+K      G+PC  P  V +DDF  +    +  +T + + + VT   V  FP +N LG+SLAR+D A  GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD  +FP+ ++HFQ+N   +  A+   S NS NPG+     A+F +
Sbjct:   29 LQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGS 192          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 69/189 (36.51%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD        G+ C+ P  VTAD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FP GL+HFQ N      A+   + +S NPG+     A+F +   +S +++ +   +   T+  L+A
Sbjct:   28 LQDFCVADKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVGKGTIDWLQA 216          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.737e-26
Identity = 68/189 (35.98%), Postives = 105/189 (55.56%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD        G+ C+ P  V AD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +   +S  ++ +   ++  T+  L+A
Sbjct:   29 LQDFCVADKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQA 217          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.737e-26
Identity = 69/189 (36.51%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD        G+ C+ P  V AD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K LKKGD+ +FP GL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+A
Sbjct:   29 LQDFCVADEHSPVLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQA 217          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.737e-26
Identity = 68/189 (35.98%), Postives = 106/189 (56.08%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD+       G+ C+ P  V AD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  NT++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +   +S  ++ +   ++  T+  L+A
Sbjct:   28 LQDFCVADMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQA 216          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 67/166 (40.36%), Postives = 92/166 (55.42%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPA--GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSS-ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 595
            + DFCV     +D     G  C  P +VT +DF F+GL  A        + VT   V   P +N LG+SL R+D    G  P HTHP ASE+L V  G +  GF++S+  N ++ KTL +GD+ +FPQGL+HFQVN G   A+ F   +S NPG+      +F +N
Sbjct:   28 LQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSN 193          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 70/190 (36.84%), Postives = 106/190 (55.79%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVADL       G+ C  P   +ADDF  +  L    +T + + + VT   V Q P +N LG+S+ARLD A  G+ P HTHP A+EI  V+ G +  GF++S+  N +  K L KGD+ +FP+GL+HFQ N      A+   + +S NPG+     A+F +N  +S  ++ +   +D   +  L+A
Sbjct:   30 LQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQA 219          
The following BLAST results are available for this feature:
BLAST of CK937473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL83_ORYSJ2.036e-2638.41Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ2.036e-2636.41Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL85_ORYSJ3.473e-2636.51Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ4.536e-2639.02Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL89_ORYSJ5.924e-2636.51Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL87_ORYSJ7.737e-2635.98Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL86_ORYSJ7.737e-2636.51Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ7.737e-2635.98Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL19_ARATH1.011e-2540.36Putative germin-like protein subfamily 1 member 9 ... [more]
GL82_ORYSJ1.320e-2536.84Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_C10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937473 ID=CK937473; Name=CK937473; organism=Citrus sinensis; type=EST; length=738bp
GCGGGGATAGCCATTATCATCAAAATANNNACACTAAATATTAGTCAAAA
TGCTTCACATTCTCTTCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAAT
GCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTCC
CGCCGGCTATCCTTGCGTGCCCCCCGCTATGGTTACCGCTGACGACTTCG
TATTTTCGGGCCTCGGCGTGGCCGGAAACACCACGAGCATTATCAACGCG
GCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTGAATGGGCTCGG
ACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCC
ACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCGTA
ACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCT
TAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAG
TAAATTCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCG
AATCCTGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTC
TTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGA
GGCTCAAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACAT
TCTTCATTNNNAGTTNNNAGTTCTTAATTTCATTTAGT
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