CK937473

Overview
NameCK937473
Unique NameCK937473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 2
Query:  107 VNDFCVA-DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSS--ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAI 664
            + D+CVA   K      G  C  P +VT+DDF  SGL + GNT   + + V PA +   P +N LG+ +AR+D A GG+IP H HP ASEI+LV+ G +  GF+SS+    T++ K L  GD+ + P GL+ F  N G   A+   +  S NPG      A+F +   +  +++ +   LD   V+ L+ +
Sbjct:   30 LQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGSFVNPANI---PGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAFALDINIVRYLRKV 217          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 72/195 (36.92%), Postives = 109/195 (55.90%), Query Frame = 2
Query:  107 VNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 673
            + DFCVADL   + S  G+ C P +    DDF+FS  L  AGNT++   +AVT   VA++P  N LG+S+ R+D A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   V FNS +P +      LF +N  +   ++ +   ++   V+ LK+   G
Sbjct:   29 LQDFCVADLDGKAVSVNGHMCKPMSEA-GDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFAG 222          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25
Identity = 71/191 (37.17%), Postives = 104/191 (54.45%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPA-GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAI 664
            + D+CVA  + +     G  C  P  VT +DF  SGL V GNT     A  T   V + P +N LG+ +AR D A GG+ P HTHP  S+I LV+ G +  GF+SS+    T++ K L  GD+ +FP+GL+HF  N G   A+   +  S +PG  I   A+F +   +  +++ +   LD   VK L+A+
Sbjct:   30 LQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAV 220          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 61/164 (37.20%), Postives = 98/164 (59.76%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 592
            + DFCVAD+       G+ C  P  V+++DF  +    +  NT + + + VT   V +FP +N LG+SLAR+D A  GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD+ +FP+ ++HFQ+N   D  A+   + +S NPG+     A+F +
Sbjct:   29 LQDFCVADMNSPVRVNGFACKNPMDVSSEDFFNAAKFDMPRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGS 192          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 66/191 (34.55%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSI--INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVADL  +    G+ C  P  V+ADDF  + +      T++  + + +T   V + P +N LG+S+ R+D A  G+ P HTHP A+EI  V+ G +  GF++S+  N ++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG+     A+F +N  +S  ++ +   +D   +  L+A
Sbjct:   29 LQDFCVADLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLLQA 219          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 73/194 (37.63%), Postives = 105/194 (54.12%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTT-SIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD        G+PC     V  DDF  +  L    +TT S   + VT   V +   +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F +N  +S  ++ +   +D   V  L+A
Sbjct:   28 LQDFCVADRNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 67/189 (35.45%), Postives = 103/189 (54.50%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD+       G+ C+ P  V AD F  + +      T+ + + VT   V Q P +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  N  + K L KGD+ +FP GL+HFQ N      A+   + +S NPG      A+F +   +S  ++ +   ++  T+  L+A
Sbjct:   28 LQDFCVADMHSPVLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQA 216          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 73/194 (37.63%), Postives = 104/194 (53.61%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVF-SGLGVAGNTT-SIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + DFCVAD        G+PC     V  DDF   + L    +TT S   + VT   V +   +N LG+S+AR+D A  G  P HTHP A+EIL V  G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F +N  +S  ++ +   +D   V  L+A
Sbjct:   28 LQDFCVADRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQA 221          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 62/168 (36.90%), Postives = 94/168 (55.95%), Query Frame = 2
Query:  173 PAMVTADDFVFSGLGVAGNTTSIINA---AVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAIL 667
            P  +T D F F+G     NT+S        VT A +A+FPA+NG  +S A L      V P HTHP ++E+LLVV G ++ GFI ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S  PG+      +F   +   ++ ++   D  T+ +LKA L
Sbjct:   42 PMNITGDFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGTGIDDAVLAKSFKTDVPTILKLKANL 208          
BLAST of CK937473 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 70/201 (34.83%), Postives = 104/201 (51.74%), Query Frame = 2
Query:  107 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG---------LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCVTAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 661
            + D CVAD        G+PC     V+ DDF  +             AG+  ++IN       V +   +N LG+S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FP+GL+HFQ N   D  A   V+ +S NPG      A+F +N  +S  ++ +   +D   V  L+A
Sbjct:   28 LQDLCVADKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLIN-------VMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQA 221          
The following BLAST results are available for this feature:
BLAST of CK937473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL13_ARATH2.251e-2536.65Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GER3_WHEAT2.940e-2536.92Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL14_ARATH3.840e-2537.17Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL812_ORYSJ1.117e-2437.20Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL81_ORYSJ1.459e-2434.55Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL122_ORYSJ1.459e-2437.63Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL811_ORYSJ2.489e-2435.45Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL121_ORYSJ2.489e-2437.63Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL92_ORYSJ9.458e-2436.90Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL123_ORYSJ1.235e-2334.83Putative germin-like protein 12-3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_C10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937473 ID=CK937473; Name=CK937473; organism=Citrus sinensis; type=EST; length=738bp
GCGGGGATAGCCATTATCATCAAAATANNNACACTAAATATTAGTCAAAA
TGCTTCACATTCTCTTCTTCTTCCTTGCTTTCGTATCCTCTTCCTCCAAT
GCTATGGTTAACGACTTCTGCGTCGCTGACCTAAAGCTGTCGGATAGTCC
CGCCGGCTATCCTTGCGTGCCCCCCGCTATGGTTACCGCTGACGACTTCG
TATTTTCGGGCCTCGGCGTGGCCGGAAACACCACGAGCATTATCAACGCG
GCAGTGACACCTGCATTTGTAGCTCAATTTCCGGCCGTGAATGGGCTCGG
ACTCTCCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCC
ACACTCATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCGTA
ACTGCCGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCT
TAAGAAGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAG
TAAATTCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCG
AATCCTGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTC
TTCCCAATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGA
GGCTCAAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACAT
TCTTCATTNNNAGTTNNNAGTTCTTAATTTCATTTAGT
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