CK937439

Overview
NameCK937439
Unique NameCK937439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937439_ssr5 microsatellite CK937439_ssr5:5..24. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937439_ssr67 microsatellite CK937439_ssr67:67..76. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937439_ssr122 microsatellite CK937439_ssr122:122..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2797 contig Csv1_Contig2797:27..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.563e-24
Identity = 58/164 (35.37%), Postives = 103/164 (62.80%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            +++YA VARG VVLAE++  +GN  ++  + L+KL    S+ +  ++ D + F+ L  +G T+  +A+++ GR++P ++LE +   F+  Y            +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT
Sbjct:    2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAPAYA-MNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKT 163          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 58/162 (35.80%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  178 LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-EKVLDRGEKIELLVDKT 660
            +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY  +ADE  GR+IP  FL+ VK+ F S Y            +N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV++T
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERT 162          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.483e-22
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R    +FL  VK  F + Y            +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT 161          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y            +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKT
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKT 161          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.618e-21
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  VK  F + Y            +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT 161          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y            +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT 161          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 53/162 (32.72%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + Y            +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT 161          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 53/162 (32.72%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY    + F+Y+  +   Y  + D+   R     FL  +K  F + Y            +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT 161          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            MSQ  ++YA V+   V L E+   +GNF  +A + + K+P ++ K  Y  + H F+Y+ +N   +  +  E  G QIP  FL  ++ +F+  Y             +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKT
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKT 162          
The following BLAST results are available for this feature:
BLAST of CK937439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA714_ARATH1.563e-2435.37Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAM7B_DICDI1.911e-2235.80Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_MOUSE9.483e-2233.33Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK1.239e-2134.76Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT1.618e-2132.72Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN4.706e-2132.72Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN4.706e-2132.72Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB1.048e-2032.72Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI9.813e-1934.34Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_G01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937439 ID=CK937439; Name=CK937439; organism=Citrus sinensis; type=EST; length=660bp
GGGGCTCTCTCTCTCTCTCTCTCTCGCGTAAAAAAGCAAAGCATAGCAAC
AAACAAAATTGGAGAGGAGAGAGAGACCTCTTGGAGCTTTAAAACAAAAT
AAAAAATAAAAACAAGCCCAGATCTCATCTCATCTCAACTCGACTCAATT
AGTCTCATCAAAATGAGCCAGAAATCGCTGATCTACGCCTTCGTGGCGCG
CGGAAATGTTGTGCTTGCTGAGTACACTGAGTTCAGTGGCAATTTCAACT
CCATAGCCTATCAGTGCCTCCAGAAACTCCCTGCTTCCAACAACAAGTTC
ACTTACAACTGTGATGCTCACACCTTCAATTATCTCGTCGATAATGGTTA
CACATATTGTGTGGTCGCAGATGAATCGTCCGGAAGACAAATACCGATGG
CTTTTCTGGAGCGCGTCAAGGATGAATTTGTTTCCAAATATGGAGGTGGA
AAGGCTNNNNCGGCTCCTGCCAATGGCCTGAACAAGGAATTTGGACCAAA
ATTGAAAGAACCTATGCAGTACTGTGTTGATCATCCTGAGGAGATCAGCA
AGCTTGCGAAGGTTAAGGCTCAGGTTTCAGAAGTCAAAGGTGTTATGATG
GAGAATATTGAAAAGGTTTTAGATAGGGGGGAAAAGATTGAGCTACTGGT
CGATAAGACT
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