CK937420

Overview
NameCK937420
Unique NameCK937420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937420 vs. ExPASy Swiss-Prot
Match: FUT3_ARATH (Fucosyltransferase 3 OS=Arabidopsis thaliana GN=FUT3 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 3.496e-53
Identity = 123/291 (42.27%), Postives = 168/291 (57.73%), Query Frame = 3 
Query:   36 IAVLSIALPVLFILVLICRDRGLNPFIGAEDDLSKLIREDEPTSEDEINGENQLSSDKL-LGGL-LAPNFTKRDCLSRYQSISYRKSSPYVPSLYLVSKLREYEKLHNRCGPDTESYKNSIKDMVSGQNDSS--SECRYVVWIARAG-LGNRILSIASAFLYALLTNRVLLIDEEPEMANLFCEPFPNATWLLPKDFPFMYRISRFKQNYAKSYGNMLKKNKINASTDLLPTHLYLYLCNDYDHHDKLFFCDQDQTILRNIPWLIMKSNLYFLPSLFLMSSFEEELDKLFP 893
            +AVL +A  V+F L ++ RD   +  I  E     L        +  ++ +  LS  K  LG + L P+F K  CLSRY++  YRK SP+  S YL  +L+ YE LH RCGP T SY  ++  + SG       S CRYV+W+   G LGNR+LS+ASAFLYALLTNR LL++   +MA+LFCEPFPN TW LP +FP     +  +Q+  ++ GN              P   Y ++  D     KLFFC+  Q +L   PWLI+K++ +FLPSLF +SSF++EL  LFP
Sbjct:   44 LAVLMVA-SVMFSLSVVLRDPPSDDVIETEAASRVL--------QSRLHQDGGLSEKKAQLGNINLVPSFDKESCLSRYEASLYRKESPFKQSSYLDYRLQRYEDLHRRCGPFTRSYNLTLDKLKSGDRSDGEVSGCRYVIWLNSNGDLGNRMLSLASAFLYALLTNRFLLVELGVDMADLFCEPFPNTTWFLPPEFPLNSHFN--EQSLLRNSGN--------------PMVAYRHVVRDSSDQQKLFFCEDSQVLLEETPWLILKADSFFLPSLFSVSSFKQELQMLFP 309
The following BLAST results are available for this feature:
BLAST of CK937420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FUT3_ARATH3.496e-5342.27Fucosyltransferase 3 OS=Arabidopsis thaliana GN=FU... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004510_A06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937420 ID=CK937420; Name=CK937420; organism=Citrus sinensis; type=EST; length=893bp
GGGGGGTGCGTTGGAGCATGACACGGTTTCCAAAAATTGCTGTCCTGTCA
ATAGCTTTGCCTGTCTTATTCATACTTGTTTTGATTTGCAGAGATAGAGG
GTTGAATCCGTTCATTGGTGCTGAAGACGACTTATCTAAGCTTATCAGAG
AGGATGAACCCACCAGTGAGGATGAAATCAATGGTGAGAATCAACTCAGC
AGTGACAAACTTCTTGGTGGGCTTCTTGCACCAAACTTCACGAAAAGAGA
TTGCTTAAGCAGGTACCAATCCATCTCATATCGAAAATCTTCGCCGTATG
TGCCTTCTTTGTACCTTGTTTCCAAGCTACGAGAATATGAAAAGCTTCAT
AATAGATGCGGACCTGACACAGAGTCATACAAGAACAGCATAAAAGACAT
GGTATCTGGTCAAAATGACAGTTCCTCCGAGTGTAGATACGTTGTTTGGA
TAGCCAGAGCCGGCCTGGGAAACAGAATATTGAGCATAGCATCAGCTTTT
CTTTATGCTCTTCTTACAAACCGAGTTCTGCTCATTGACGAAGAACCTGA
AATGGCCAATCTGTTCTGTGAGCCATTTCCAAATGCAACATGGTTGTTGC
CAAAGGACTTTCCCTTCATGTATCGAATCTCCCGTTTCAAACAGAATTAT
GCAAAGAGTTACGGGAATATGCTTAAGAAGAATAAGATAAATGCTTCGAC
AGATCTGCTGCCAACACACCTTTATCTCTACCTGTGTAATGATTATGATC
ATCATGACAAGCTGTTTTTCTGTGATCAAGATCAAACTATTCTCAGGAAC
ATACCGTGGTTGATAATGAAGTCAAATCTCTACTTTCTTCCATCTCTTTT
CCTGATGTCATCTTTTGAGGAAGAGCTAGACAAGCTATTTCCT
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