CK937408

Overview
NameCK937408
Unique NameCK937408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_ZYGCR (Photosystem II reaction center protein K OS=Zygnema circumcarinatum GN=psbK PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 2
Query:   86 MFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            MF L    L     S + + AKLPEAYA  +PIVDV+PVIPV F LLAFVWQA+VSFR
Sbjct:    1 MFDLYLKNLLDLSDSGTVVLAKLPEAYAIFDPIVDVLPVIPVFFLLLAFVWQASVSFR 58          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_OLTVI (Photosystem II reaction center protein K OS=Oltmannsiellopsis viridis GN=psbK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 2
Query:  134 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            S L AKLPEAYA  +PIVDV+P+IPVLF LLAFVWQA+VSFR
Sbjct:    2 SLLLAKLPEAYAPFDPIVDVLPIIPVLFLLLAFVWQASVSFR 43          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_CHAVU (Photosystem II reaction center protein K OS=Chara vulgaris GN=psbK PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2
Query:  128 SSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            S++   AKLPEAYA  +P+VDVMPVIPV F LLAFVWQA+VSFR
Sbjct:   16 SNNIFLAKLPEAYAIFDPLVDVMPVIPVFFLLLAFVWQASVSFR 59          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_TRIEI (Photosystem II reaction center protein K OS=Trichodesmium erythraeum (strain IMS101) GN=psbK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 2
Query:  134 SFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            + L AKLPEAY+  NP+VDV+PVIPV F LLAFVWQAAV FR
Sbjct:    4 AMLLAKLPEAYSVFNPLVDVLPVIPVFFLLLAFVWQAAVGFR 45          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_PSEAK (Photosystem II reaction center protein K OS=Pseudendoclonium akinetum GN=psbK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 2
Query:  131 SSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            ++ L AKLPEAYA  +PIVDV+PVIP+LF LLAFVWQA+VSFR
Sbjct:    2 TTLLLAKLPEAYAPFDPIVDVLPVIPLLFLLLAFVWQASVSFR 44          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_HUPLU (Photosystem II reaction center protein K OS=Huperzia lucidula GN=psbK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2
Query:  143 FAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            FAKLPEAYA  +PIV+VMP+IP+ FFLLAFVWQA+VSFR
Sbjct:   15 FAKLPEAYAVSDPIVNVMPIIPLFFFLLAFVWQASVSFR 53          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_PORYE (Photosystem II reaction center protein K OS=Porphyra yezoensis GN=psbK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  110 LNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            +NSAL+      AKLPEAYA   PI+D++PVIPV F LLAFVWQAA+ FR
Sbjct:    1 MNSALF-----LAKLPEAYAIFKPIIDILPVIPVFFLLLAFVWQAAIGFR 45          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_PORPU (Photosystem II reaction center protein K OS=Porphyra purpurea GN=psbK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  110 LNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            +NSAL+      AKLPEAYA   PIVD++PVIPV F LLAFVWQAA+ FR
Sbjct:    1 MNSALF-----LAKLPEAYAVFKPIVDILPVIPVFFLLLAFVWQAAIGFR 45          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_OSTTA (Photosystem II reaction center protein K OS=Ostreococcus tauri GN=psbK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2
Query:  137 FLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            FL  +LPEAYA  +PIVDV+P+IPVLF LLAFVWQA+VSFR
Sbjct:    5 FLIGRLPEAYAPFDPIVDVLPIIPVLFLLLAFVWQASVSFR 45          
BLAST of CK937408 vs. ExPASy Swiss-Prot
Match: PSBK_MESVI (Photosystem II reaction center protein K OS=Mesostigma viride GN=psbK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 2
Query:  140 LFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 259
            + AKLPEAYA  +P+VDV+PVIP+LF LLAFVWQA+VSFR
Sbjct:    8 ILAKLPEAYAMFDPLVDVLPVIPLLFLLLAFVWQASVSFR 47          
The following BLAST results are available for this feature:
BLAST of CK937408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PSBK_ZYGCR1.532e-1162.07Photosystem II reaction center protein K OS=Zygnem... [more]
PSBK_OLTVI1.532e-1178.57Photosystem II reaction center protein K OS=Oltman... [more]
PSBK_CHAVU1.532e-1172.73Photosystem II reaction center protein K OS=Chara ... [more]
PSBK_TRIEI4.457e-1173.81Photosystem II reaction center protein K OS=Tricho... [more]
PSBK_PSEAK4.457e-1174.42Photosystem II reaction center protein K OS=Pseude... [more]
PSBK_HUPLU4.457e-1179.49Photosystem II reaction center protein K OS=Huperz... [more]
PSBK_PORYE5.820e-1164.00Photosystem II reaction center protein K OS=Porphy... [more]
PSBK_PORPU5.820e-1166.00Photosystem II reaction center protein K OS=Porphy... [more]
PSBK_OSTTA5.820e-1175.61Photosystem II reaction center protein K OS=Ostreo... [more]
PSBK_MESVI7.602e-1175.00Photosystem II reaction center protein K OS=Mesost... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004510_A12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937408 ID=CK937408; Name=CK937408; organism=Citrus sinensis; type=EST; length=666bp
TCATTTTTATCTTATATCAATAAGATATTAGTAACTCAATCAAAATAAAA
TTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATGTTTAGTTTAATG
TATATCTGTCTCAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCGCTAA
ATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATGCCAG
TAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTA
AGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATTTATT
CTAGTTCGAAAAAAAAAAAATTCTAACAATTAATAAATAAGAGCAGATGA
GTCTTACAATATGAACGAACCCCCGCCTCAATTCAAACATTCAAACAATG
AAATTCTTGGGGAACCGCGATCCATTTTGATCCCCCATTTGCTATTTGCA
ATTTTGACCCTTTTTCACTGAAACCATCTTATATTAGAGCCAACCAAAAT
GTAGAATTCTAATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTA
GAGAATCAAATTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATA
TGTAGTATAAAAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAAA
AAAAAAAAAAAAAAAA
back to top