CX675308

Overview
NameCX675308
Unique NameCX675308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: YQKF_BACSU (Uncharacterized oxidoreductase yqkF OS=Bacillus subtilis GN=yqkF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 59/179 (32.96%), Postives = 93/179 (51.96%), Query Frame = 2
Query:   29 ISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFA-ELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 562
            +SI+  A   GI + DTAD Y    NE ++G A++   R +I +ATK G   + G +      +  Y++   + SL RL  +YIDLY  H       I+ETI   ++L +EG I+Y G+S   P+ I+       I ++ +++SL+ R  E E +PL  E  I +V   P+ +G    K
Sbjct:   31 LSILDEAIELGINYLDTADLYDRGRNEEIVGDAIQNR-RHDIILATKAGNRWDDGSEGWYWDPSKAYIKEAVKKSLTRLKTDYIDLYQLHGGTIEDNIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYVKKSNIVSIMMQFSLFDRRPE-EWLPLLEEHQISVVARGPVAKGLLTEK 207          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: STCV_EMENI (Putative sterigmatocystin biosynthesis dehydrogenase stcV OS=Emericella nidulans GN=stcV PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKGN-----PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP------DTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRG 547
            V++E   +++   +  G  F DTA+ Y    +E  LG+ +     R+ + +ATK+  +        +K N      + +R   EASL +L  +YIDL Y H  D S  +EE +  +  LV  GK+  IG+S+A        +   R H +      Q  W+   RD E EI+P+C+  G+ + P+  LGRG
Sbjct:   48 VTKETAFALLDRFYEAGGNFIDTANFYQGEGSEKWLGEWVASRGNRDELVLATKYTMSYRLTGPEKIKSNFQGSHSKSLRLSVEASLAKLRTDYIDLLYVHMWDFSTSVEEVMQSLHHLVAAGKVLNIGISDAPAWVVAKCNEYARFHGLTRFCVYQGRWACSYRDFEREILPMCQSEGLALAPWGALGRG 238          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: AAD4_YEAST (Probable aryl-alcohol dehydrogenase AAD4 OS=Saccharomyces cerevisiae GN=AAD4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.789e-16
Identity = 55/201 (27.36%), Postives = 99/201 (49.25%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFG-----FAELGLDAVIVKGNPEY-VRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVE 574
            +++E    ++   +  G    DTA+ Y    +EI +G+ +K    R+ I +ATKF      +   G  +    GN ++ +      SL++L  ++ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      H   P +  Q +W++  RD E +I+P+ R  G+ + P+  +G G F  K  +E
Sbjct:    4 MNKEQAFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMKSRKLRDQIVIATKFTGDYKKYEVGGGKSANYCGNHKHSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSIYQGKWNVLNRDFERDIIPMARHFGMALAPWDVMGGGRFQSKKAME 204          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: AAD_PHACH (Aryl-alcohol dehydrogenase [NADP+] OS=Phanerochaete chrysosporium PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.949e-16
Identity = 53/194 (27.32%), Postives = 96/194 (49.48%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFG--------FAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH------AVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRG 547
            + +E    ++   +N G  F DTA+ Y   T+E  +G+ ++    R+ + VATK+         F E+      V  + + +      SL++L   YID++Y H  D +  IEE +  +  LV +GK+ Y+G+S+     + +A+         P    + EW++  RD+E +I+P+C   G+ I P++ L  G
Sbjct:   50 MDKEASFKLLDAFYNAGGNFIDTANVYQDETSEEFIGEWMEARGNRDQMVVATKYSLVYKRGASFEEIPQKTQYVGNSLKSMHISVHDSLRKLRTSYIDIFYVHFWDYTCTIEEVMNGLHNLVAQGKVLYLGVSDTPAWVVSKANNYARMAGKTPFVIYEGEWNITMRDMERDIIPMCIHEGMAIAPWNVLCAG 243          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.464e-16
Identity = 59/204 (28.92%), Postives = 107/204 (52.45%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDS 592
            +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK     +PP S
Sbjct:   64 ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK-YDSGIPPYS 263          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.464e-16
Identity = 59/204 (28.92%), Postives = 107/204 (52.45%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDS 592
            +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK     +PP S
Sbjct:   64 ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK-YDSGIPPYS 263          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.464e-16
Identity = 57/194 (29.38%), Postives = 100/194 (51.55%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 562
            +S+E    ++  A+  G+  FDTA+ Y     E++LG  LK     R ++ + TK  +   G  A   +G + +++     ASL+RL +EY+D+ + +R D + P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK
Sbjct:   98 ISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK 288          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 59/204 (28.92%), Postives = 107/204 (52.45%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDS 592
            +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK     +PP S
Sbjct:   64 ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK-YDSGIPPYS 263          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 59/204 (28.92%), Postives = 107/204 (52.45%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDS 592
            +++E    ++  A++ GI  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    +ASL+RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G + +SPL  G   GK     +PP S
Sbjct:   64 ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGK-YDSGIPPYS 263          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 63/219 (28.77%), Postives = 111/219 (50.68%), Query Frame = 2
Query:   11 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDS--FLVCFSSMFVRIV 631
            +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K     R ++ + TK  +   G  A   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G + +SPL  G   GK     VP  S   L C+  +  RIV
Sbjct:   98 ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGK-YGNGVPESSRASLKCYQWLKERIV 312          
The following BLAST results are available for this feature:
BLAST of CX675308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
YQKF_BACSU1.701e-1632.96Uncharacterized oxidoreductase yqkF OS=Bacillus su... [more]
STCV_EMENI1.701e-1630.37Putative sterigmatocystin biosynthesis dehydrogena... [more]
AAD4_YEAST3.789e-1627.36Probable aryl-alcohol dehydrogenase AAD4 OS=Saccha... [more]
AAD_PHACH4.949e-1627.32Aryl-alcohol dehydrogenase [NADP+] OS=Phanerochaet... [more]
KCAB2_HUMAN6.464e-1628.92Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN6.464e-1628.92Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_CHICK6.464e-1629.38Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB2_RAT8.442e-1628.92Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE8.442e-1628.92Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT8.442e-1628.77Voltage-gated potassium channel subunit beta-1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61D04-H7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675308 ID=CX675308; Name=CX675308; organism=Citrus sinensis; type=EST; length=807bp
CAATTCTCCAGTCTCTGAAGAGGATGGCATCTCTATAATAAAGCATGCTT
TCAATAAAGGAATCACTTTCTTTGATACTGCTGATAAATATGGACCATAT
ACTAATGAAATTCTTCTTGGAAAGGCCTTGAAGATGTTGCCCAGAGAAAA
CATACAAGTAGCCACAAAGTTTGGGTTTGCAGAATTGGGACTTGATGCTG
TGATTGTGAAGGGTAACCCTGAGTATGTGCGCTCATGTTGTGAAGCTAGC
TTGAAGCGCCTTGATGTGGAATACATTGATCTGTATTATCAACATAGAGT
GGACACATCAGTCCCCATAGAGGAAACTATTGGCGAAATGAAAAAGCTGG
TGGAAGAGGGTAAAATCAAGTACATAGGATTATCTGAGGCTAGCCCAGAT
ACAATTAGGAGAGCACATGCTGTTCATCCTATCACAGCTGTACAACTGGA
ATGGTCTCTTTGGACTCGTGACATTGAGAATGAGATAGTACCACTTTGCA
GGGAGCTTGGCATTGGAATAGTTCCATACAGTCCTCTTGGTCGTGGATTT
TTCGGTGGCAAAGCTGTTGTGGAAAGTGTGCCTCCAGATAGCTTTTTGGT
ATGTTTTTCATCAATGTTTGTCCGCATCGTTTTGTTTCATAACACAGTAT
AACATAGATGTTTTTAAGAAACAACATGAGCTTTCCAGTTTCATTTGAGA
CTAATGTTCCATATGTGGTGAAGCTTATTAAAATTCTGCATGTATCTGTT
TTATAAGAATTTTCTTCCTCGGTTCACCGGAGAGAACCTGGACAGAAACA
GGAGTAT
back to top