CX675308

Overview
NameCX675308
Unique NameCX675308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 54/188 (28.72%), Postives = 92/188 (48.94%), Query Frame = 2
Query:    5 SPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPL 538
            S +S+E    ++  A+  G+  FDTA+ Y     E  LG  LK     R +  + TK  +   G  A   +G + +++    + SL RL +EY+D+ + +R D S P+EE +  M  ++ +G   Y G S  S   I  A+++       P    Q E   + R+ +E ++  L  ++G+G V +SPL
Sbjct:  103 SQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFW---GGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPPVCEQAENHFFQREKVEMQLPELYHKIGVGSVTWSPL 287          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2
Query:    5 SPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKG-NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWTRD-IENEIVPLCRELGIGIVPYSPLGRGFFGGK 562
            S +S+E    ++  A+  G+  FDTA+ Y     E  LG  LK     R +  + TK  +   G  A   +G + +++      SL+RL + Y+D+ + +R D + P+EE +  M  ++ +G   Y G S      I  A+++       P    Q E  L+ R+ +E ++  L  ++G+G V + PL  G    K
Sbjct:  103 SQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFW---GGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLACGLITSK 295          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: Y1669_ARATH (Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 58/195 (29.74%), Postives = 93/195 (47.69%), Query Frame = 2
Query:   47 AFNKGITFFDTADKYGP------YTNEILLGKALK----MLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH-----PITAVQLEWSLWTRDIENE-IVPLCRELGIGIVPYSPLGRGFFGGKAVVESVP 583
            + + GI FFDTA+ YG        ++E LLG+ ++      P   + VATKF        A+  +   E V +  + SL RL++  +DLY  H        E  +  +   VE+G +K +G+S  S   +R A+        P+ + Q+ +SL  R  E   +   C ELG+ ++ YSP+ +G   GK   E+ P
Sbjct:   94 SLDNGIDFFDTAEVYGSKFSLGAISSETLLGRFIRERKERYPGAEVSVATKFA-------ALPWRFGRESVVTALKDSLSRLELSSVDLYQLHWPGLWGN-EGYLDGLGDAVEQGLVKAVGVSNYSEKRLRDAYERLKKRGIPLASNQVNYSLIYRAPEQTGVKAACDELGVTLIAYSPIAQGALTGKYTPENPP 280          
BLAST of CX675308 vs. ExPASy Swiss-Prot
Match: ARK73_RAT (Aflatoxin B1 aldehyde reductase member 3 OS=Rattus norvegicus GN=Akr7a3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 57/186 (30.65%), Postives = 83/186 (44.62%), Query Frame = 2
Query:   38 IKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPREN--IQVATKFGFAELGLDAVIVKGN---PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGK 562
            ++    +G T  DTA  Y    +E +LG     L R    +++ATK         A  + G    P  VR   E SLKRL    +DL+Y H  D   PIEET+    +L +EGK   +GLS       A   T+ + +     T  Q  ++  TR +E E+ P  R  G+    ++PL  G   G+
Sbjct:   28 VRAFLQRGHTEIDTAFVYANGQSETILGDLGLGLGRSGCKVKIATK---------AAPMFGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLTGR 204          
The following BLAST results are available for this feature:
BLAST of CX675308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
KCAB3_RAT7.395e-1228.72Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_HUMAN3.670e-1127.04Voltage-gated potassium channel subunit beta-3 OS=... [more]
Y1669_ARATH8.177e-1129.74Uncharacterized oxidoreductase At1g06690, chloropl... [more]
ARK73_RAT8.177e-1130.65Aflatoxin B1 aldehyde reductase member 3 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61D04-H7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675308 ID=CX675308; Name=CX675308; organism=Citrus sinensis; type=EST; length=807bp
CAATTCTCCAGTCTCTGAAGAGGATGGCATCTCTATAATAAAGCATGCTT
TCAATAAAGGAATCACTTTCTTTGATACTGCTGATAAATATGGACCATAT
ACTAATGAAATTCTTCTTGGAAAGGCCTTGAAGATGTTGCCCAGAGAAAA
CATACAAGTAGCCACAAAGTTTGGGTTTGCAGAATTGGGACTTGATGCTG
TGATTGTGAAGGGTAACCCTGAGTATGTGCGCTCATGTTGTGAAGCTAGC
TTGAAGCGCCTTGATGTGGAATACATTGATCTGTATTATCAACATAGAGT
GGACACATCAGTCCCCATAGAGGAAACTATTGGCGAAATGAAAAAGCTGG
TGGAAGAGGGTAAAATCAAGTACATAGGATTATCTGAGGCTAGCCCAGAT
ACAATTAGGAGAGCACATGCTGTTCATCCTATCACAGCTGTACAACTGGA
ATGGTCTCTTTGGACTCGTGACATTGAGAATGAGATAGTACCACTTTGCA
GGGAGCTTGGCATTGGAATAGTTCCATACAGTCCTCTTGGTCGTGGATTT
TTCGGTGGCAAAGCTGTTGTGGAAAGTGTGCCTCCAGATAGCTTTTTGGT
ATGTTTTTCATCAATGTTTGTCCGCATCGTTTTGTTTCATAACACAGTAT
AACATAGATGTTTTTAAGAAACAACATGAGCTTTCCAGTTTCATTTGAGA
CTAATGTTCCATATGTGGTGAAGCTTATTAAAATTCTGCATGTATCTGTT
TTATAAGAATTTTCTTCCTCGGTTCACCGGAGAGAACCTGGACAGAAACA
GGAGTAT
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