CK937406

Overview
NameCK937406
Unique NameCK937406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 9.644e-101
Identity = 179/194 (92.27%), Postives = 189/194 (97.42%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 586
            KIGGIGTVPVGRVETGV+KPGM+VTF P+GLTTEVKSVEMHHEAL EALPGDNV FNVKNVAVKDLK G VASNSKDDPA++AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG
Sbjct:  243 KIGGIGTVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 3.665e-100
Identity = 178/194 (91.75%), Postives = 190/194 (97.94%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 586
            KIGGIGTVPVGRVETG +KPGMVVTFGPSGLTTEVKSVEMHHE+L EALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRFAVR MRQTVAVGVIK+VEKKDPTG
Sbjct:  243 KIGGIGTVPVGRVETGTIKPGMVVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTG 436          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.375e-99
Identity = 177/194 (91.24%), Postives = 187/194 (96.39%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 586
            KIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+PTG
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 6.911e-99
Identity = 176/194 (90.72%), Postives = 187/194 (96.39%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 586
            KIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVE+HHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+PTG
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEVHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.330e-85
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 574
            KIGGIGTVPVGRVETGVLKPGM+VTF PS +TTEVKSVEMHHEALQEALPGDNVGFNVKN++VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  255 KIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 7.418e-85
Identity = 152/190 (80.00%), Postives = 172/190 (90.53%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 574
            KIGGIGTVPVGRVETGVLKPGM+VTF PS +TTEVKSVEMHHEAL EALPGDNVGFNVKN++VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  255 KIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.158e-84
Identity = 147/194 (75.77%), Postives = 176/194 (90.72%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 586
            KIGGIGTVPVGRVETG++KPGMVV+F PS +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVGVIKSVEK +  G
Sbjct:  255 KIGGIGTVPVGRVETGIIKPGMVVSFAPSNVTTEVKSVEMHHEQLAEGLPGDNVGFNVKNVSVKDIRRGDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.158e-84
Identity = 147/194 (75.77%), Postives = 173/194 (89.18%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 586
            KIGGIGTVPVGRVETG+LKPGM+VTF P  LTTEVKSVEMHHEALQEALPGDNVGFNVKN+++KD++RG VAS+SK+DPA+E   FT+QVIIMNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRRSGK++E  PK LK+GDAG++ +IPTKP+ VETF++YPPLGRFAVRDMRQTVAVGVIK+V+K +  G
Sbjct:  255 KIGGIGTVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSEGVG 448          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.158e-84
Identity = 153/190 (80.53%), Postives = 171/190 (90.00%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 574
            KIGGIGTVPVGRVETGV+KPGMVVTF P  +TTEVKSVEMHHEAL EA+PGDNVGFNVKNV+VKD++RG VA +SK+DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  255 KIGGIGTVPVGRVETGVIKPGMVVTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of CK937406 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 3.682e-84
Identity = 148/194 (76.29%), Postives = 173/194 (89.18%), Query Frame = 2
Query:    5 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 586
            KIGGIGTVPVGRVETGV+KPG VVTF P+ +TTEVKS+EMHHE L EA PGDNVGFNVKNV+VKD++RG V  N+K+DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK+V KKD +G
Sbjct:  243 KIGGIGTVPVGRVETGVMKPGDVVTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
The following BLAST results are available for this feature:
BLAST of CK937406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
EF1A_PEA9.644e-10192.27Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A1_DAUCA3.665e-10091.75Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU2.375e-9991.24Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU6.911e-9990.72Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A2_XENLA3.330e-8580.00Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A3_XENLA7.418e-8580.00Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_PIRIN2.158e-8475.77Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_ONCVO2.158e-8475.77Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A0_XENLA2.158e-8480.53Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_TRYBB3.682e-8476.29Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004510_D07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937406 ID=CK937406; Name=CK937406; organism=Citrus sinensis; type=EST; length=872bp
GGGCAAGATTGGTGGCATTGGAACAGTTCCAGTGGGTCGCGTTGAGACTG
GTGTGCTCAAGCCTGGTATGGTGGTGACATTTGGTCCCTCTGGATTGACA
ACTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCT
TCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATC
TCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAA
GCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGAT
TGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCG
TCAAGTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAG
CTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAA
GATGATTCCCACCAAGCCCATGGTTGTTGAGACATTCTCCGACTACCCAC
CCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGT
GTTATCAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCCAAGGTCACCAA
GTCCGCAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAG
TTAGGGTTTATTTTCTGTCTTTTTTATTTTCTTTTCTGTTTTTGTTTTGC
ATCAATGTTTCTGCAAACAGCCCTATTTGCTTCCACCAGTTTGCTGTTGA
GCAATTGGGATGTTATCTTTCTGCTTAACTGGCTGTCGTGGGGGTTCGGA
TTTTTATATTCTGAATTTGGTTAATAGCACTAAATTGAGTTGTGAAGTTT
ATAGACCAGCTGCTGGATGTCA
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