EY665876

Overview
NameEY665876
Unique NameEY665876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.737e-105
Identity = 190/230 (82.61%), Postives = 203/230 (88.26%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKN 700
            LVFAKM INPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V +  IV+LVD  PGQSIDFFGALRARVYDDEVRKWISGVGV+S+GK LVNSKE  PT  +  MT++ LL Y  +   E +N
Sbjct:  181 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQEN 410          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 2.964e-105
Identity = 185/230 (80.43%), Postives = 204/230 (88.70%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKN 700
            LVF KM INPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+SG G+E+IG  L+NS +  PT  +  MT+E LL+Y  +   E +N
Sbjct:  181 LVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQEN 410          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 377.867 bits (969), Expect = 4.279e-104
Identity = 190/244 (77.87%), Postives = 203/244 (83.20%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LV AKM INPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+ IV LVD FPGQSIDFFGALRARVYDDEVRK++  +GVE IGK LVNS+E  P   +  MT E L++Y  +   E +N +   L     S A
Sbjct:  177 LVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 420          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 4.279e-104
Identity = 185/230 (80.43%), Postives = 200/230 (86.96%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKN 700
            LVF KM INPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  + +VK+VD FPGQSIDFFGALRARVYDDEVRKW+SG G+E IG  L+NS +  PT  +  MT+E LL+Y  +   E +N
Sbjct:  181 LVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQEN 410          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 372.089 bits (954), Expect = 2.348e-102
Identity = 182/244 (74.59%), Postives = 204/244 (83.61%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            LVFAK+ INPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  +H+VKLVD FPGQSIDFFGALRARVY DEVRKW++ VGV+++GK LVNSK+  P   +  MT++ L++Y  +   E +N +   L     S A
Sbjct:  175 LVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSA 418          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 7.087e-91
Identity = 169/244 (69.26%), Postives = 193/244 (79.10%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYSGA 742
            L + K+ I PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV    +  LVDTFPGQSIDFFGALRARVYDD VR+WI+  GV+ IG+ LVN++++   + K  M +  L++Y K    E +N +   L     SGA
Sbjct:  150 LAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGA 392          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.664e-73
Identity = 146/267 (54.68%), Postives = 182/267 (68.16%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSL--------GSNNYSGAGPPFAEPPCSKHSP 784
            L F KM +   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++   + KLVD+FP QSIDFF ALR+R+YD+++R +I  VG E++   +VNS E  P   K   T+ +L++       E K  +TS L           +Y  A  P AE   S+ SP
Sbjct:   49 LAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEYNRLNRGRSYQPAS-PVAEIATSQPSP 314          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 7.368e-72
Identity = 150/279 (53.76%), Postives = 184/279 (65.95%), Query Frame = 2
Query:   11 LVFAKMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVESIGKSLVNSKEQTPTLSKQGMTMENLLQYRKLDGPEPKNGQTSSLGSNNYS----GAGPPFAEPPCSKHSPPPAHFQCVTSSYNPHL 832
            L F KM I   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++   I +LVDTFP QSIDFF ALR+R+YD ++R +I  VG E I   +VNS E  P   K   ++ +L++   L   E +    S L  + Y+    G G   A PP +    P  +      + N HL
Sbjct:   49 LAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQL-VDEYNRLNRGRGYQTAPPPEAPVIQPVNNSSHKQKTSNTHL 326          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.322e-25
Identity = 81/169 (47.93%), Postives = 81/169 (47.93%), Query Frame = 2
Query:   23 KMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDHIVKLVDTFPGQSIDFFGALR 529
            KM INPIMMSAGELESGNAGEPAK                 MCCL INDLDAGAGR                                         VPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   57 KMGINPIMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGR-----------------------------------------VPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
BLAST of EY665876 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 38/61 (62.30%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   23 KMPINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 205
            +M INPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY665876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_PHAVU1.737e-10582.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.964e-10580.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH4.279e-10477.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC4.279e-10480.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.348e-10274.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE7.087e-9169.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC6.664e-7354.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP7.368e-7253.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.322e-2547.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX2.493e-1162.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665876 ID=EY665876; Name=EY665876; organism=Citrus sinensis; type=EST; length=885bp
CCCGCGTCCGCTTGTTTTCGCCAAGATGCCCATCAACCCAATTATGATGA
GTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACCCGCTAAGTTGATC
AGGCAGAGGTACCGTGAGGCAGCTGACATTATCAAGAAGGGAAAAATGTG
CTGCCTCATGATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGTGGCA
CCACCCAGTACACAGTTAACAACCAAATGGTTAACGCCACACTCATGAAC
ATTGCTGATAACCCAACTTGTGTCCAACTCCCTGGTATGTACAACAAGGA
GGAGAACCCCCGTGTCCCAATCATAGTCACCGGTAATGACTTCTCAACAT
TGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCA
CCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTATCTTCAGGAATGA
CAATGTGGCTGATGACCACATTGTCAAGCTTGTCGACACCTTCCCCGGCC
AATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATGATGATGAG
GTGAGGAAGTGGATCTCTGGGGTTGGTGTGGAAAGCATTGGAAAGAGCCT
TGTGAACTCAAAGGAACAAACCCCCACATTGAGCAAACAAGGGATGACAA
TGGAAAATTTGCTCCAATACCGGAAACTTGATGGGCCAGAACCAAAAAAT
GGGCAAACAAGTTCACTTGGCTCCAACAATTATTCTGGCGCAGGGCCCCC
CTTTGCTGAACCTCCATGCTCCAAACACTCTCCCCCACCCGCCCACTTTC
AATGCGTCACTTCCTCCTACAATCCACACCTAAAAAGGCACAATTTGAGG
GTCGATTTTCATACCCACACAATGACCCGCCCCCC
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