CK937349

Overview
NameCK937349
Unique NameCK937349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937349 vs. ExPASy Swiss-Prot
Match: SET_HUMAN (Protein SET OS=Homo sapiens GN=SET PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  333 RKRVEVLREIQSEHDELEAKFFEERAAL*AKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLT 824
            ++ +E + E+Q+E D L  +  EE   +  KY KL QP + KR E++                         +P+FW+T   N+  +S  + E DE AL +L  ++    +D K G++++FYFD NPYF+N VL+K +H+ +  +P    +  TEI+W  GK LT
Sbjct:   42 QEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI-----------------------AKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDP---SSKSTEIKWKSGKDLT 180          
BLAST of CK937349 vs. ExPASy Swiss-Prot
Match: NP1L3_MOUSE (Nucleosome assembly protein 1-like 3 OS=Mus musculus GN=Nap1l3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.161e-14
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  528 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNTVLTKTY---HMIDEDEPI------LEKAIGTEIEWYPGKCLT 824
            K  + KG+PD+WLT +KN D L   I + DE  LKFL D+  K+     P G+  EF+F PNPYF+N +L KTY      D  +P       +E+  G +I+W  GK +T
Sbjct:  342 KKEDPKGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPIGYTFEFHFLPNPYFRNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRGKDVT 451          
BLAST of CK937349 vs. ExPASy Swiss-Prot
Match: NP1L3_PONAB (Nucleosome assembly protein 1-like 3 OS=Pongo abelii GN=NAP1L3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.686e-14
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  528 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNTVLTKTY---HMIDEDEPI------LEKAIGTEIEWYPGKCLT 824
            K  + KG+PD+WL  +KN D L   I + DE  LKFL D+  K+ +   P  +  EF+F PNPYF+N VL KTY      D ++P       +E   G +I+W  GK +T
Sbjct:  308 KREDPKGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYFRNEVLVKTYIIKSKPDHNDPFFSWGWEIEDCEGCKIDWRRGKDVT 417          
BLAST of CK937349 vs. ExPASy Swiss-Prot
Match: NP1L3_HUMAN (Nucleosome assembly protein 1-like 3 OS=Homo sapiens GN=NAP1L3 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.686e-14
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  528 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNTVLTKTYHM---IDEDEPI------LEKAIGTEIEWYPGKCLT 824
            K  + KG+PD+WL  +KN D L   I + DE  LKFL D+  K+ +   P  +  EF+F PNPYF+N VL KTY +    D ++P       +E   G +I+W  GK +T
Sbjct:  304 KREDPKGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYFRNEVLVKTYIIKAKPDHNDPFFSWGWEIEDCKGCKIDWRRGKDVT 413          
BLAST of CK937349 vs. ExPASy Swiss-Prot
Match: SET_DROME (Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.389e-13
Identity = 63/205 (30.73%), Postives = 91/205 (44.39%), Query Frame = 3
Query:  219 RASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAAL*AKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNTVLTKTYHM---IDEDEPILEKAIGTEIEWYPGKCL 821
            RA LD GA AD            AG + +  E L        E +   Q+E D L  K  EE   +  KY KL +P Y KR E+V                       K +P+FW+T+  N+  +S  + E +E  L  L  ++    +D K G+++ F+FD NPYF+N VLTK +H+      +      +  T I+W  GK L
Sbjct:    7 RAKLD-GAPAD------GNTSAAAGNNEEESEAL--------EQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELV-----------------------KRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNL 173          
BLAST of CK937349 vs. ExPASy Swiss-Prot
Match: NP1L3_RAT (Nucleosome assembly protein 1-like 3 OS=Rattus norvegicus GN=Nap1l3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.322e-13
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  528 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNTVLTKTY---HMIDEDEPI------LEKAIGTEIEWYPGKCLT 824
            K    +G+PD+WLT +KN D L   I + DE  LKFL D+  K+     P  +  EF+F PNPYF+N +L KTY      D  +P       +E+  G +I+W  GK +T
Sbjct:  335 KEDPPRGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPISYTFEFHFLPNPYFRNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRGKDVT 444          
The following BLAST results are available for this feature:
BLAST of CK937349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SET_HUMAN1.889e-1832.73Protein SET OS=Homo sapiens GN=SET PE=1 SV=3[more]
NP1L3_MOUSE2.161e-1440.91Nucleosome assembly protein 1-like 3 OS=Mus muscul... [more]
NP1L3_PONAB3.686e-1440.00Nucleosome assembly protein 1-like 3 OS=Pongo abel... [more]
NP1L3_HUMAN3.686e-1440.00Nucleosome assembly protein 1-like 3 OS=Homo sapie... [more]
SET_DROME2.389e-1330.73Protein SET OS=Drosophila melanogaster GN=Set PE=1... [more]
NP1L3_RAT5.322e-1339.09Nucleosome assembly protein 1-like 3 OS=Rattus nor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004511_A04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937349 ID=CK937349; Name=CK937349; organism=Citrus sinensis; type=EST; length=824bp
GGGGAGGGCGAGGGAGAGGATTTAAGCGAGGCCACGTTTTCTTCTGACGC
CTCTCTTAACTCATCAAAGTCGAAACTCGTTTCCCTTGTTTTTCACCAAT
TCCTTTTTGTTCGCCTAGGGTTTTAGCACCCTATCCCCTCGCTCTCTCTA
AAACGCCGTCGCTTCTTCCTCCGCCGACAATGAGCGCCGACAAAGATAAC
TTCAACGTTACAGATCTCCGCGCCTCTCTTGATGAAGGGGCTCGAGCTGA
CCTCGTGGGTGTTCTGAAGAATAAACTTCAGAACCTTGCTGGGCAGCACT
CTGATGTTCTCGAGAAACTGACTCCAGCAGTCAGGAAGCGTGTTGAGGTT
CTCAGAGAGATCCAGAGTGAACATGATGAATTGGAGGCAAAATTTTTTGA
GGAGAGAGCAGCACTGTAAGCCAAATATCAAAAATTGTATCAGCCTATGT
ACACCAAGAGATATGAGATTGTCAATGGTGTTGTTGAAGGGGCCCCAAAT
GAAGTTGCAATGGACCAGGAAGAGGATAAAGCCACTGAAGAGAAAGGAGT
GCCGGACTTCTGGCTTACTGCAATGAAAAATAATGATGTCCTATCTGAGG
AAATTACTGAGCGCGATGAAGGAGCTCTCAAGTTTCTCAAAGACATTAAG
TGGTTTAGGATTGATGATCCAAAGGGATTCAAGCTTGAATTCTACTTTGA
CCCCAATCCATACTTCAAGAACACTGTCTTGACAAAGACCTATCACATGA
TTGATGAAGATGAGCCTATTCTTGAGAAAGCTATAGGGACGGAGATTGAA
TGGTATCCAGGGAAATGCTTGACN
back to top