CX675298

Overview
NameCX675298
Unique NameCX675298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.542e-51
Identity = 87/121 (71.90%), Postives = 104/121 (85.95%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 365
            CM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISF+A KP
Sbjct:   55 CMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.542e-51
Identity = 88/123 (71.54%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   50 CMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.014e-51
Identity = 87/123 (70.73%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   50 CMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.630e-51
Identity = 93/123 (75.61%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   47 CMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.630e-51
Identity = 87/123 (70.73%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   55 CMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.630e-51
Identity = 93/123 (75.61%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   47 CMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.630e-51
Identity = 93/123 (75.61%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   47 CMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.630e-51
Identity = 91/121 (75.21%), Postives = 105/121 (86.78%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 365
            CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:   53 CMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.435e-51
Identity = 87/123 (70.73%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   50 CMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX675298 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.435e-51
Identity = 87/123 (70.73%), Postives = 106/123 (86.18%), Query Frame = 3
Query:    3 CMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 371
            CMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   50 CMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
The following BLAST results are available for this feature:
BLAST of CX675298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_MESCR1.542e-5171.90Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_FLAPR1.542e-5171.54Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_FLAPR2.014e-5170.73Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_ORYSJ2.630e-5175.61Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS2_FLAPR2.630e-5170.73Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ORYSJ2.630e-5175.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.630e-5175.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_LEMGI2.630e-5175.21Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS7_FLAPR3.435e-5170.73Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR3.435e-5170.73Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61C09-F17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675298 ID=CX675298; Name=CX675298; organism=Citrus sinensis; type=EST; length=673bp
AATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTC
TCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTA
CCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAG
GATGGGTGTACCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGC
TACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCA
GGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCG
TCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTC
CTTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAAC
CACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATC
ATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTG
TTGCTGCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTT
TTTTATATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATC
TGGGTCTCGGATGTTCAGTTTAATGAGTGAGAATTACTGGAATTAAAAGA
GTAGTTTTATGATTCTTGCAAAA
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