CK937346

Overview
NameCK937346
Unique NameCK937346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 591
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R   L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R   L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579
            K ++ P  P+ KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR   L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R   L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R   L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R   L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23
Identity = 65/158 (41.14%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579
            K+++ P+RP+ K R++ E RLV EYGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R   L    + +D VLAL V   LERRLQTLV++ G+A+S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.531e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 1
Query:  442 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.611e-23
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579
            K ++ P+ P+ KERL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R   ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.410e-23
Identity = 62/162 (38.27%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  103 RNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 576
            + + K +  P  P+ K RL+ E++LV +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++   L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:    5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
The following BLAST results are available for this feature:
BLAST of CK937346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_THESM6.870e-2441.5130S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_PYRHO6.870e-2442.5830S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_THEGJ8.973e-2442.5830S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_THEON1.172e-2342.5830S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PYRFU1.172e-2341.9430S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB1.172e-2341.9430S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_METB61.172e-2341.1430S ribosomal protein S4P OS=Methanoregula boonei ... [more]
RS9_TOBAC1.531e-2386.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS4_AERPE2.611e-2337.4230S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_ARCFU3.410e-2338.2730S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_B09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937346 ID=CK937346; Name=CK937346; organism=Citrus sinensis; type=EST; length=834bp
GGGGACGCCATTTGCTTANNNNNTTACAAAGATCGCAGAGAGAGAGAGAG
AGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGTTTCATTCT
ACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGGGAAG
GAGCGATTGGATGCTGAGTTGAGGCTTGTGGGAGAGTATGGGCTTCGCTG
CAAGAGGGAACTCTGGAGGGTTCAATATGCATTGAGCCGCATCCGAAATG
CTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTC
GAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTACCGCTTCTTGGAAGA
GAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTC
TTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCA
ATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAG
GCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGC
ACATTGAATTCTCACTCACAAGTCCATTCGGAGGTGGGCGCCCTGGAAGA
GTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGA
TGGGGATGAAGAGAATGAAGAATAAATTACCTGTGTGAACAGATAGTTTT
TTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCT
TCTCTAAGTTTTATGTTTTTATTTGCGAATTTTCTTGCTATAATAGGAGG
TTTTGCTTGCTTTGTGTTTTACAGACTACTCATT
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