CK937346
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24 Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 591 K ++ P P+ KERLD E LV +Y L+ K+ELW+ + L R AR LL K E LL+R+ R L E + LD VL+LT+++ LERRLQTLVFK G+A++I AR LI HI V Q++ PS++V + + I + SPF + Sbjct: 9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24 Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R L E LD VL+LTVE+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24 Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579 K ++ P P+ KERLD E L +Y L+ K+ELWR + L R AR LL K E + LL+R+HR L + LD VL+LTVE+ LERRLQTLV+K G+A++I AR LI HI V Q++ P ++V + + I ++ SPF Sbjct: 9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23 Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579 K ++ P P+ KERLD E L+ +Y L+ K+ELWR + L R AR LL K E LL+R++R L + LD VL+LTVE+ L+RRLQT+VFK G+A++I AR LI HI V Q++ P ++V + + I +S TSPF Sbjct: 9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23 Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23 Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.172e-23 Identity = 65/158 (41.14%), Postives = 95/158 (60.13%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579 K+++ P+RP+ K R++ E RLV EYGLR KRE+W+ Q L + R AAR+LL L + +FE + L+ M R L + +D VLAL V LERRLQTLV++ G+A+S AR L+ HI +G + V +P ++V + I ++ SPF Sbjct: 9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.531e-23 Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 1 Query: 442 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 615 AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N Sbjct: 1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.611e-23 Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 579 K ++ P+ P+ KERL+ E L+G YGLR K+ELW+ + R R+ AR LL L + R L+ ++R ++ +D VL + E LERRLQT+V+K G+AK+I+ AR L+ HI + + V P ++V + +K I+++ SPF Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.410e-23 Identity = 62/162 (38.27%), Postives = 96/162 (59.26%), Query Frame = 1 Query: 103 RNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 576 + + K + P P+ K RL+ E++LV +YGLR KRELWR Q L + R ARDLL ++ + + +++++++ L E+ LD +L L+VE+FLERRLQT+V++ G+A++I AR I HI V + V PSF+V + + I F SP Sbjct: 5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165 The following BLAST results are available for this feature:
BLAST of CK937346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937346 ID=CK937346; Name=CK937346; organism=Citrus sinensis; type=EST; length=834bpback to top |