CK937346

Overview
NameCK937346
Unique NameCK937346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.816e-23
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 576
            K +  PR P+ K+R+D E +++ +YGL+ KRE+WR +  LS IR+ AR L   L   + N ++  + E +++R+ RY+ L +    LD VL+LTVEN L+RRLQT+VFK  +A S   AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.816e-23
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ +   L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.816e-23
Identity = 60/164 (36.59%), Postives = 95/164 (57.93%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 600
            KT+ +PR+P+  +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+  L++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.296e-22
Identity = 57/164 (34.76%), Postives = 96/164 (58.54%), Query Frame = 1
Query:  103 RNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            R   + ++ P  P+  + L +E +++G+YGLR K+E+W  +  ++  R+ AR LL L      R    + LL ++++   L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:    5 RKSRRKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ +   L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ +   L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ +   L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ +   L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ +   L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query:  115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ +   L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
The following BLAST results are available for this feature:
BLAST of CK937346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_THEVO5.816e-2340.1330S ribosomal protein S4P OS=Thermoplasma volcaniu... [more]
RS4_SULSO5.816e-2336.8830S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_METTP5.816e-2336.5930S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_METS51.296e-2234.7630S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_SULIY1.692e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN1.692e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM1.692e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL1.692e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK1.692e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIA1.692e-2236.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_B09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937346 ID=CK937346; Name=CK937346; organism=Citrus sinensis; type=EST; length=834bp
GGGGACGCCATTTGCTTANNNNNTTACAAAGATCGCAGAGAGAGAGAGAG
AGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGTTTCATTCT
ACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGGGAAG
GAGCGATTGGATGCTGAGTTGAGGCTTGTGGGAGAGTATGGGCTTCGCTG
CAAGAGGGAACTCTGGAGGGTTCAATATGCATTGAGCCGCATCCGAAATG
CTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTC
GAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTACCGCTTCTTGGAAGA
GAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTC
TTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCA
ATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAG
GCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGC
ACATTGAATTCTCACTCACAAGTCCATTCGGAGGTGGGCGCCCTGGAAGA
GTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGA
TGGGGATGAAGAGAATGAAGAATAAATTACCTGTGTGAACAGATAGTTTT
TTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCT
TCTCTAAGTTTTATGTTTTTATTTGCGAATTTTCTTGCTATAATAGGAGG
TTTTGCTTGCTTTGTGTTTTACAGACTACTCATT
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