CK937346
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.816e-23 Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 576 K + PR P+ K+R+D E +++ +YGL+ KRE+WR + LS IR+ AR L L + N ++ + E +++R+ RY+ L + LD VL+LTVEN L+RRLQT+VFK +A S AR LI HI V + V +P +V + I + SP Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.816e-23 Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + L++ +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.816e-23 Identity = 60/164 (36.59%), Postives = 95/164 (57.93%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 600 KT+ +PR+P+ +R+ E+ L+ YGLR KRELW+ + L + R R LL + R E A++ R+ R+ L++ + LD +L+L + + LERRLQT V++ G+A +I AR I HI+V Q V +PS++V+ + I++ SP G P R Sbjct: 9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.296e-22 Identity = 57/164 (34.76%), Postives = 96/164 (58.54%), Query Frame = 1 Query: 103 RNYGKTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 R + ++ P P+ + L +E +++G+YGLR K+E+W + ++ R+ AR LL L R + LL ++++ L+ Q+ +D +L L E+ LERRLQT+V + G+A++I+ AR LI HI VG + + P ++V+ D + I+F TSPF P Sbjct: 5 RKSRRKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CK937346 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.692e-22 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1 Query: 115 KTFKKPRRPYGKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYRFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 594 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166 The following BLAST results are available for this feature:
BLAST of CK937346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937346 ID=CK937346; Name=CK937346; organism=Citrus sinensis; type=EST; length=834bpback to top |