CK937341

Overview
NameCK937341
Unique NameCK937341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 49/166 (29.52%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  210 DVVIVAAYRTANCKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 704
            DVVIV   RT   ++K G  ++T A+ + A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI+ G  D+ +  G+E M    + ++  V+P   +   A      MG+T+E + +  G++R+ QD
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM--GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQD 170          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 55/167 (32.93%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  207 DDVVIVAAYRTANCKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 704
            + VVIV A RT   ++K G F+   A+DL A ++++++ + T L+  E+ DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A AI  G  ++ +  G+E M    ++     +P +   T A+   + MG+T+E +A+   ++R+ QD
Sbjct:    2 EKVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNTALDAREIDDIYWGCVQQALEQGFNVARNAALLAEIPVSVPATTVNRLCGSSMQALHDAARAIMVGDANVCLIGGVEHMGHVPMNHGVDFHPGLS-RTIAKAAGM-MGLTAEMLARMHNISREMQD 166          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: THLA_CLOD6 (Acetyl-CoA acetyltransferase OS=Clostridium difficile (strain 630) GN=thlA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 55/176 (31.25%), Postives = 88/176 (50.00%), Query Frame = 3
Query:  210 DVVIVAAYRTANCKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQD 704
            +VVI +A RTA   +  G FK   A +L     K  I++  + P  + + ++G VL  G  + +  R  A  AG P   P  T+N  C SGL++V+  +  I  G  DI +  G E+M+     V S     ++     + +  +D L        MGIT+EN+A+++ +TR+EQD
Sbjct:    3 EVVIASAARTA-VGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNI-ARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQD 176          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: FADA_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 48/167 (28.74%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  207 DDVVIVAAYRTANCKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 704
            ++VVIV   RT   ++K G F++  A+ L A ++K ++ +   LNP ++ D++ G V           R A+  AG P+++   TVNR C S ++A+   +T+I +G  D+ +  G+E M    + ++  V+    +          MG+T+E + ++ G+TR+ QD
Sbjct:    2 NEVVIVDCIRTPMGRSKAGVFRNVRAEALSAHLMKQILVRNPALNPEDIEDVIWGCVKQTKEQGFNIARNASLLAGLPKSIGGVTVNRLCGSSMEALHQASTSIMSGQGDVFLIGGVEHM--GHVPMMYDVDFDPALNKNIALASGNMGLTAELLGKQHGITREMQD 166          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: THIL_MOUSE (Acetyl-CoA acetyltransferase, mitochondrial OS=Mus musculus GN=Acat1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 60/188 (31.91%), Postives = 93/188 (49.47%), Query Frame = 3
Query:  183 YHRKPAFDDDVVIVAAYRTANCKAKRGGFKDTLADD----LLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT----VNSISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQD 704
            Y  KP  ++ VVIV+A RT       G F  +LA      L    ++  IEK  +   EV ++ +G V+  G  +A   R A   AG P + P  TVN+ C+SG++A+   + ++  G  D+ +A G+ESM+    V S         K+E     +D L      + MG  +EN A++  ++RQEQD
Sbjct:   30 YASKPTLNE-VVIVSAIRTPI-----GSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVKEVYMGNVIQGGEGQA-PTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMSRGATPYGGVKLEDLI-VKDGLTDVYNKIHMGNCAENTAKKMNISRQEQD 209          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  261 GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL----------------PMGITSENVAQRFGVTRQEQD 704
            G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+  +  V+G+         +  D  +                 M  T+ENVA+   ++R++QD
Sbjct:   19 GALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS-RAPFVMGKATSAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQD 182          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: THIC_RAT (Acetyl-CoA acetyltransferase, cytosolic OS=Rattus norvegicus GN=Acat2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  198 AFDDDVVIVAAYRTANCKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-------VNSISVVGQVNPKVEIFTQA-RDCL--LPMGITSENVAQRFGVTRQEQD 704
            A  D VVI++A RTA   +  G        +L   V+K V+++ ++ P EV +++ G VL  G  +    R A+  AG P +VP  +    C SGL+AV   A +I  G   I +A G+E+M+       + S   +G+V     I      D      MGIT+ENVA+++ V+R+ QD
Sbjct:    3 AGSDPVVIISAARTA-IGSFNGALSTVPVHNLGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQN-PTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPHLAHLRSGVKMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQD 179          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  261 GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL----------------PMGITSENVAQRFGVTRQEQD 704
            G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+  +  V+G+         +  D  +                 M  T+ENVA+   ++R++QD
Sbjct:   19 GALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS-RAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQD 182          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: FADA_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 53/167 (31.74%), Postives = 83/167 (49.70%), Query Frame = 3
Query:  207 DDVVIVAAYRTANCKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 704
            + VVIV A RT   ++K G F++  A+DL A ++++++ +   L  + + DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G    G+  G+E M    +S     +P +            MG+T+E +A+  G++R+ QD
Sbjct:    2 EQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQAGLVGGVEHMGHVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLARMHGISREMQD 166          
BLAST of CK937341 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 51/164 (31.10%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  216 VIVAAYRTANCKAKRGGFKDTLADDLLAPVLKAV-IEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 704
            VIV   RT   ++K G F++  A+ L A ++KA+ I   +L+PS + D++ G V           R A+  AG P+T    TVNR C S + A+   A AI  G+ D  I  G+E M    + +   V+    +  +       MG+T+E + +  G++R++QD
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKALLIRNPQLDPSLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMNHGVDFHPGLANRVAKASGMMGLTAEMLGKMHGISREQQD 166          
The following BLAST results are available for this feature:
BLAST of CK937341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
FADA_PSEA76.015e-1329.523-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_ERWCT6.015e-1332.933-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
THLA_CLOD61.026e-1231.25Acetyl-CoA acetyltransferase OS=Clostridium diffic... [more]
FADA_COLP31.026e-1228.743-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
THIL_MOUSE1.340e-1231.91Acetyl-CoA acetyltransferase, mitochondrial OS=Mus... [more]
PAAJ_ECOLX1.340e-1231.52Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
THIC_RAT1.750e-1232.96Acetyl-CoA acetyltransferase, cytosolic OS=Rattus ... [more]
PAAJ_ECOLI1.750e-1231.52Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
FADA_SHISS1.750e-1231.743-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]
FADA_SHEDO1.750e-1231.103-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004511_B03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937341 ID=CK937341; Name=CK937341; organism=Citrus sinensis; type=EST; length=757bp
CGGCCGGGGGTTCTCGNNNCCTTTGAACTCTAAAGCTCTCNNNTGAAACC
TGAGAGTGAGAGAGGGGGAAAGCTCTTCACAGACAGAGAATTCTGCTTCA
ACATCTTCGACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCTG
CGTCGATTTGTTCGGCTGGTGAGGCTGCAGGGTACCATAGGAAGCCTGCT
TTTGATGATGATGTCGTAATTGTGGCTGCATACCGAACTGCAAATTGCAA
GGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCAC
CTGTTCTGAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTA
GGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCAT
GGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCC
TCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGAT
GTTGCAACTGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGG
ATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACC
CCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGT
ATCACTTCTGAAAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCA
AGACCTGGCTGCCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCAT
CTGGCAA
back to top