CK937331
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_JASNU (DNA-directed RNA polymerase subunit beta'' OS=Jasminum nudiflorum GN=rpoC2 PE=3 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 7.323e-75 Identity = 144/172 (83.72%), Postives = 152/172 (88.37%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHNCL 519 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAERMGRALEE + YRAILLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IP+GTGFKGLV S+Q NN LE +K NLF GEMRDIF HHR+LFDSC S FHDTSE + L Sbjct: 1221 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAVYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPLGTGFKGLVPPSKQDNNSSLETKKKNLFEGEMRDIFFHHRKLFDSCRSKNFHDTSEQSLL 1392
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_VITVI (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera GN=rpoC2 PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.249e-74 Identity = 145/172 (84.30%), Postives = 149/172 (86.63%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQ--KGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRA EE ICYR ILLGITRASLNTQSFISEASFQET RVLAKAAL GRIDWLKGLKENVVLGG+IPVGTGFKGLVH SRQHNNI LE + K NLF EMRDI HHRELFDSC S FHDTSE + Sbjct: 1216 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAFEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDWLKGLKENVVLGGMIPVGTGFKGLVHRSRQHNNIPLEMETKKNNLFEREMRDILFHHRELFDSCSSKNFHDTSEQS 1387
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.249e-74 Identity = 143/170 (84.12%), Postives = 150/170 (88.24%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+FLPGELIGLLRA R GRALEE ICYRAILLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVH SRQH NI L+ +K N F GE+ DI HHRELFDS IS FHDTSE + Sbjct: 1216 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHRSRQHKNIPLKTKKKNFFEGEIGDILFHHRELFDSSISKKFHDTSEQS 1385
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_DRIGR (DNA-directed RNA polymerase subunit beta'' OS=Drimys granadensis GN=rpoC2 PE=3 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 6.199e-74 Identity = 142/168 (84.52%), Postives = 148/168 (88.10%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSE 507 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GR+LEE ICYRAIL GITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLVH SRQ NNI LE +K NLF GE+RDI HHRELF SCI FH+T E Sbjct: 1213 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRSLEEAICYRAILWGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVHRSRQDNNIPLEIKKKNLFEGEIRDILFHHRELFGSCIPNNFHNTPE 1380
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_MANES (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta GN=rpoC2 PE=3 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 1.804e-73 Identity = 144/172 (83.72%), Postives = 150/172 (87.21%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEM--RDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICY AILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLV SRQH NI L+ +K NLF GE RDI HHRELFDSCIS +DTSE + Sbjct: 1215 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYGAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQGSRQHKNIPLKTKKKNLFEGEFRDRDILFHHRELFDSCISKNLYDTSEQS 1386
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_COFAR (DNA-directed RNA polymerase subunit beta'' OS=Coffea arabica GN=rpoC2 PE=3 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 1.804e-73 Identity = 139/170 (81.76%), Postives = 148/170 (87.06%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HN+HIEIIVRQITSKVL+SEDGMSN+F PGELIGLLRAERMGRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLV S+QHN LLE +K NLF GEMRDI HHR FDS + FHD SE + Sbjct: 1215 QGVQIHNKHIEIIVRQITSKVLISEDGMSNVFSPGELIGLLRAERMGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVKPSKQHNKALLETKKKNLFEGEMRDILFHHRNFFDSFLLKKFHDPSEQS 1384
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_NYMAL (DNA-directed RNA polymerase subunit beta'' OS=Nymphaea alba GN=rpoC2 PE=3 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.356e-73 Identity = 142/170 (83.53%), Postives = 150/170 (88.24%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCI--STTFHDTSE 507 QGV HN+HIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFK VH SR++NNI LE QK N FGGEMRDI HHRELF SCI +FH+TSE Sbjct: 1212 QGVQIHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRFVHRSREYNNIPLEIQKKNFFGGEMRDILFHHRELFCSCIPKPKSFHNTSE 1381
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.169e-72 Identity = 139/172 (80.81%), Postives = 147/172 (85.47%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHNCL 519 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICYRA+LLGIT+ASLNTQSFISEASFQET RVLAKAALRGRIDWL+GLKENVVLGG+IPVGTGF+ L H SRQHNNI LE +F GEMRDI HH+ELFD IST HDTSE L Sbjct: 1218 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGEMRDILFHHKELFDFFISTNLHDTSEQEFL 1389
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_CERDE (DNA-directed RNA polymerase subunit beta'' OS=Ceratophyllum demersum GN=rpoC2 PE=3 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.169e-72 Identity = 142/172 (82.56%), Postives = 150/172 (87.21%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNL--FGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEI+VRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE I YRAIL+GITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLVH SRQHNNI LE +K NL F GEM DI HHR+ F SCI TFH+TSE + Sbjct: 1210 QGVQIHNRHIEIVVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAIRYRAILVGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVHHSRQHNNIPLEIKKRNLFEFEGEMGDILFHHRQSFGSCIQKTFHETSEQS 1381
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_BUXMI (DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla GN=rpoC2 PE=3 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 1.994e-72 Identity = 140/172 (81.40%), Postives = 149/172 (86.63%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHR--ELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSE+GMSN+F PGELIGLLRAER GRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFK LVH SRQHNNI LE +K N+F GEMRDI HHR +L + CI FHDT E + Sbjct: 1213 QGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGLIPVGTGFKVLVHRSRQHNNIPLETKKKNIFEGEMRDILFHHRKFKLLNYCIPKNFHDTPEQS 1384 The following BLAST results are available for this feature:
BLAST of CK937331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937331 ID=CK937331; Name=CK937331; organism=Citrus sinensis; type=EST; length=761bpback to top |