CK937331

Overview
NameCK937331
Unique NameCK937331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_JASNU (DNA-directed RNA polymerase subunit beta'' OS=Jasminum nudiflorum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 7.323e-75
Identity = 144/172 (83.72%), Postives = 152/172 (88.37%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHNCL 519
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAERMGRALEE + YRAILLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IP+GTGFKGLV  S+Q NN  LE +K NLF GEMRDIF HHR+LFDSC S  FHDTSE + L
Sbjct: 1221 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAVYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPLGTGFKGLVPPSKQDNNSSLETKKKNLFEGEMRDIFFHHRKLFDSCRSKNFHDTSEQSLL 1392          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_VITVI (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.249e-74
Identity = 145/172 (84.30%), Postives = 149/172 (86.63%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQ--KGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRA EE ICYR ILLGITRASLNTQSFISEASFQET RVLAKAAL GRIDWLKGLKENVVLGG+IPVGTGFKGLVH SRQHNNI LE +  K NLF  EMRDI  HHRELFDSC S  FHDTSE +
Sbjct: 1216 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAFEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDWLKGLKENVVLGGMIPVGTGFKGLVHRSRQHNNIPLEMETKKNNLFEREMRDILFHHRELFDSCSSKNFHDTSEQS 1387          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.249e-74
Identity = 143/170 (84.12%), Postives = 150/170 (88.24%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+FLPGELIGLLRA R GRALEE ICYRAILLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVH SRQH NI L+ +K N F GE+ DI  HHRELFDS IS  FHDTSE +
Sbjct: 1216 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHRSRQHKNIPLKTKKKNFFEGEIGDILFHHRELFDSSISKKFHDTSEQS 1385          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_DRIGR (DNA-directed RNA polymerase subunit beta'' OS=Drimys granadensis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.199e-74
Identity = 142/168 (84.52%), Postives = 148/168 (88.10%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSE 507
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GR+LEE ICYRAIL GITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLVH SRQ NNI LE +K NLF GE+RDI  HHRELF SCI   FH+T E
Sbjct: 1213 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRSLEEAICYRAILWGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVHRSRQDNNIPLEIKKKNLFEGEIRDILFHHRELFGSCIPNNFHNTPE 1380          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_MANES (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.804e-73
Identity = 144/172 (83.72%), Postives = 150/172 (87.21%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEM--RDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICY AILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLV  SRQH NI L+ +K NLF GE   RDI  HHRELFDSCIS   +DTSE +
Sbjct: 1215 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYGAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQGSRQHKNIPLKTKKKNLFEGEFRDRDILFHHRELFDSCISKNLYDTSEQS 1386          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_COFAR (DNA-directed RNA polymerase subunit beta'' OS=Coffea arabica GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.804e-73
Identity = 139/170 (81.76%), Postives = 148/170 (87.06%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HN+HIEIIVRQITSKVL+SEDGMSN+F PGELIGLLRAERMGRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLV  S+QHN  LLE +K NLF GEMRDI  HHR  FDS +   FHD SE +
Sbjct: 1215 QGVQIHNKHIEIIVRQITSKVLISEDGMSNVFSPGELIGLLRAERMGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVKPSKQHNKALLETKKKNLFEGEMRDILFHHRNFFDSFLLKKFHDPSEQS 1384          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_NYMAL (DNA-directed RNA polymerase subunit beta'' OS=Nymphaea alba GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.356e-73
Identity = 142/170 (83.53%), Postives = 150/170 (88.24%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCI--STTFHDTSE 507
            QGV  HN+HIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFK  VH SR++NNI LE QK N FGGEMRDI  HHRELF SCI    +FH+TSE
Sbjct: 1212 QGVQIHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRFVHRSREYNNIPLEIQKKNFFGGEMRDILFHHRELFCSCIPKPKSFHNTSE 1381          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.169e-72
Identity = 139/172 (80.81%), Postives = 147/172 (85.47%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHNCL 519
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICYRA+LLGIT+ASLNTQSFISEASFQET RVLAKAALRGRIDWL+GLKENVVLGG+IPVGTGF+ L H SRQHNNI LE     +F GEMRDI  HH+ELFD  IST  HDTSE   L
Sbjct: 1218 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGEMRDILFHHKELFDFFISTNLHDTSEQEFL 1389          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_CERDE (DNA-directed RNA polymerase subunit beta'' OS=Ceratophyllum demersum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.169e-72
Identity = 142/172 (82.56%), Postives = 150/172 (87.21%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNL--FGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEI+VRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE I YRAIL+GITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLVH SRQHNNI LE +K NL  F GEM DI  HHR+ F SCI  TFH+TSE +
Sbjct: 1210 QGVQIHNRHIEIVVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAIRYRAILVGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVHHSRQHNNIPLEIKKRNLFEFEGEMGDILFHHRQSFGSCIQKTFHETSEQS 1381          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_BUXMI (DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.994e-72
Identity = 140/172 (81.40%), Postives = 149/172 (86.63%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHR--ELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSE+GMSN+F PGELIGLLRAER GRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFK LVH SRQHNNI LE +K N+F GEMRDI  HHR  +L + CI   FHDT E +
Sbjct: 1213 QGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGLIPVGTGFKVLVHRSRQHNNIPLETKKKNIFEGEMRDILFHHRKFKLLNYCIPKNFHDTPEQS 1384          
The following BLAST results are available for this feature:
BLAST of CK937331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC2_JASNU7.323e-7583.72DNA-directed RNA polymerase subunit beta'' OS=Jasm... [more]
RPOC2_VITVI1.249e-7484.30DNA-directed RNA polymerase subunit beta'' OS=Viti... [more]
RPOC2_EUCGG1.249e-7484.12DNA-directed RNA polymerase subunit beta'' OS=Euca... [more]
RPOC2_DRIGR6.199e-7484.52DNA-directed RNA polymerase subunit beta'' OS=Drim... [more]
RPOC2_MANES1.804e-7383.72DNA-directed RNA polymerase subunit beta'' OS=Mani... [more]
RPOC2_COFAR1.804e-7381.76DNA-directed RNA polymerase subunit beta'' OS=Coff... [more]
RPOC2_NYMAL2.356e-7383.53DNA-directed RNA polymerase subunit beta'' OS=Nymp... [more]
RPOC2_CUCSA1.169e-7280.81DNA-directed RNA polymerase subunit beta'' OS=Cucu... [more]
RPOC2_CERDE1.169e-7282.56DNA-directed RNA polymerase subunit beta'' OS=Cera... [more]
RPOC2_BUXMI1.994e-7281.40DNA-directed RNA polymerase subunit beta'' OS=Buxu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_C03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937331 ID=CK937331; Name=CK937331; organism=Citrus sinensis; type=EST; length=761bp
GGGCAGGGGGTGCANNNCCATAATAGGCATATAGAAATTATTGTACGTCA
AATAACATCAAAAGTTTTAGTTTCCGAAGATGGAATGTCTAATATTTTTT
TACCCGGCGAACTGATTGGATTGTTACGAGCGGAACGAATGGGGCGCGCT
TTGGAAGAAGTGATCTGTTATCGAGCTATCTTATTGGGAATAACGAGAGC
GTCTCTGAATACTCAAAGTTTTATATCCGAAGCAAGTTTTCAAGAAACCA
CGCGAGTTTTAGCAAAAGCTGCTCTCCGAGGTCGTATCGATTGGTTGAAA
GGCCTGAAAGAAAACGTTGTTCTGGGGGGGATAATACCAGTCGGTACCGG
ATTCAAAGGATTAGTCCACTGTTCAAGGCAGCATAACAACATTCTTTTGG
AAAGACAAAAAGGGAATTTATTCGGGGGGGAAATGAGAGATATTTTCTTA
CACCACAGAGAATTATTTGACTCGTGCATTTCAACGACTTTCCATGATAC
ATCAGAGCACAATTGCTTAGAGGGTTTAATGAGTCCTAGGAGCGAATTCT
TTTAACTATTTGTGATCATTTGATTTTTTAATGGTACGAAAAGAAAGATA
ATAATGAATAGAACGAAGGATAATAATGAATAGAAAGTAATGAATGGCCT
GGGTCGTGTATCAATGGTCACTCTCTGGTAGAAGAGAAGGTTCCCTCGGA
ACAATTATTTATTTCAGGGCGCCTCGTCTCTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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