CK937331
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_DIOEL (DNA-directed RNA polymerase subunit beta'' OS=Dioscorea elephantipes GN=rpoC2 PE=3 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 2.604e-72 Identity = 140/170 (82.35%), Postives = 149/170 (87.65%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQ+TS+VLVSEDGMSN+F PGELIGLLRAER GRAL+E ICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF+ LVH SRQ NI LE +K NLF EMRDI LHHRELF SCI ++TSE + Sbjct: 1209 QGVQIHNRHIEIIVRQVTSRVLVSEDGMSNVFSPGELIGLLRAERAGRALDEAICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKLVHRSRQDKNIHLEIKKNNLFDLEMRDILLHHRELFCSCIQDNLYETSEQS 1378
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_AMBTC (DNA-directed RNA polymerase subunit beta'' OS=Amborella trichopoda GN=rpoC2 PE=3 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 2.604e-72 Identity = 139/168 (82.74%), Postives = 147/168 (87.50%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSE 507 QGV HNRHIE IVRQITSKVLVSEDGMSN+F P ELIGLLRAER+GRALE+ ICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALR RIDWLKGLKENVVLGG+IPVGTGFKG VH SR+HNNI LE +K NLF G+MRDI +HRE SCI FHDTSE Sbjct: 1205 QGVQIHNRHIETIVRQITSKVLVSEDGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSREHNNISLEIKKKNLFDGKMRDILFYHREFCGSCIPKNFHDTSE 1372
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENPA (DNA-directed RNA polymerase subunit beta'' OS=Oenothera parviflora GN=rpoC2 PE=3 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72 Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I + + F GE+RDI HHRELFDSCIS FHDT E + Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENGL (DNA-directed RNA polymerase subunit beta'' OS=Oenothera glazioviana GN=rpoC2 PE=3 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72 Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I + + F GE+RDI HHRELFDSCIS FHDT E + Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENEH (DNA-directed RNA polymerase subunit beta'' OS=Oenothera elata subsp. hookeri GN=rpoC2 PE=3 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72 Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I + + F GE+RDI HHRELFDSCIS FHDT E + Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENBI (DNA-directed RNA polymerase subunit beta'' OS=Oenothera biennis GN=rpoC2 PE=3 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72 Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I + + F GE+RDI HHRELFDSCIS FHDT E + Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENAR (DNA-directed RNA polymerase subunit beta'' OS=Oenothera argillicola GN=rpoC2 PE=3 SV=1) HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72 Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I + + F GE+RDI HHRELFDSCIS FHDT E + Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_RANMC (DNA-directed RNA polymerase subunit beta'' OS=Ranunculus macranthus GN=rpoC2 PE=3 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 1.688e-71 Identity = 140/168 (83.33%), Postives = 147/168 (87.50%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSE 507 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLVH + +NI LE +K NLF G MRDI HH+ELFDSCI F DTSE Sbjct: 1206 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVH---RLSNISLEIEKKNLFKGGMRDILFHHKELFDSCIPRNFPDTSE 1370
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_POPTR (DNA-directed RNA polymerase subunit beta'' OS=Populus trichocarpa GN=rpoC2 PE=3 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 8.378e-71 Identity = 136/170 (80.00%), Postives = 145/170 (85.29%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER RALEE ICYR + LGITRASL+TQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGL H S QH I + +K NLF GEMRDI HHRELFDSCIS F++ SE + Sbjct: 1214 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAMRALEEAICYRTVFLGITRASLSTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLAHRSSQHKIIPFKTKKKNLFEGEMRDILFHHRELFDSCISKNFYNISEQS 1383
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_POPAL (DNA-directed RNA polymerase subunit beta'' OS=Populus alba GN=rpoC2 PE=3 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 8.378e-71 Identity = 136/170 (80.00%), Postives = 145/170 (85.29%), Query Frame = 1 Query: 4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513 QGV HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER RALEE ICYR + LGITRASL+TQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGL H S QH I + +K NLF GEMRDI HHRELFDSCIS F++ SE + Sbjct: 1214 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAMRALEEAICYRTVFLGITRASLSTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLAHRSSQHKIIPFKIKKKNLFAGEMRDILFHHRELFDSCISKNFYNISEQS 1383 The following BLAST results are available for this feature:
BLAST of CK937331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937331 ID=CK937331; Name=CK937331; organism=Citrus sinensis; type=EST; length=761bpback to top |