CK937331

Overview
NameCK937331
Unique NameCK937331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_DIOEL (DNA-directed RNA polymerase subunit beta'' OS=Dioscorea elephantipes GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.604e-72
Identity = 140/170 (82.35%), Postives = 149/170 (87.65%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQ+TS+VLVSEDGMSN+F PGELIGLLRAER GRAL+E ICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF+ LVH SRQ  NI LE +K NLF  EMRDI LHHRELF SCI    ++TSE +
Sbjct: 1209 QGVQIHNRHIEIIVRQVTSRVLVSEDGMSNVFSPGELIGLLRAERAGRALDEAICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKLVHRSRQDKNIHLEIKKNNLFDLEMRDILLHHRELFCSCIQDNLYETSEQS 1378          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_AMBTC (DNA-directed RNA polymerase subunit beta'' OS=Amborella trichopoda GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.604e-72
Identity = 139/168 (82.74%), Postives = 147/168 (87.50%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSE 507
            QGV  HNRHIE IVRQITSKVLVSEDGMSN+F P ELIGLLRAER+GRALE+ ICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALR RIDWLKGLKENVVLGG+IPVGTGFKG VH SR+HNNI LE +K NLF G+MRDI  +HRE   SCI   FHDTSE
Sbjct: 1205 QGVQIHNRHIETIVRQITSKVLVSEDGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSREHNNISLEIKKKNLFDGKMRDILFYHREFCGSCIPKNFHDTSE 1372          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENPA (DNA-directed RNA polymerase subunit beta'' OS=Oenothera parviflora GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72
Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I    +  + F GE+RDI  HHRELFDSCIS  FHDT E +
Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENGL (DNA-directed RNA polymerase subunit beta'' OS=Oenothera glazioviana GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72
Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I    +  + F GE+RDI  HHRELFDSCIS  FHDT E +
Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENEH (DNA-directed RNA polymerase subunit beta'' OS=Oenothera elata subsp. hookeri GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72
Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I    +  + F GE+RDI  HHRELFDSCIS  FHDT E +
Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENBI (DNA-directed RNA polymerase subunit beta'' OS=Oenothera biennis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72
Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I    +  + F GE+RDI  HHRELFDSCIS  FHDT E +
Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_OENAR (DNA-directed RNA polymerase subunit beta'' OS=Oenothera argillicola GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.802e-72
Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+FLP ELIGLLRAER GRALEE ICY+A LLGITR SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVV+GG+IPVGTGFKGLVHCS+QH +I    +  + F GE+RDI  HHRELFDSCIS  FHDT E +
Sbjct: 1210 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKSI---PKNKHFFEGEIRDILFHHRELFDSCISKNFHDTPEQS 1376          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_RANMC (DNA-directed RNA polymerase subunit beta'' OS=Ranunculus macranthus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.688e-71
Identity = 140/168 (83.33%), Postives = 147/168 (87.50%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSE 507
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER GRALEE ICYRA+LLGITRASLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGLVH   + +NI LE +K NLF G MRDI  HH+ELFDSCI   F DTSE
Sbjct: 1206 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVH---RLSNISLEIEKKNLFKGGMRDILFHHKELFDSCIPRNFPDTSE 1370          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_POPTR (DNA-directed RNA polymerase subunit beta'' OS=Populus trichocarpa GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.378e-71
Identity = 136/170 (80.00%), Postives = 145/170 (85.29%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER  RALEE ICYR + LGITRASL+TQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGL H S QH  I  + +K NLF GEMRDI  HHRELFDSCIS  F++ SE +
Sbjct: 1214 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAMRALEEAICYRTVFLGITRASLSTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLAHRSSQHKIIPFKTKKKNLFEGEMRDILFHHRELFDSCISKNFYNISEQS 1383          
BLAST of CK937331 vs. ExPASy Swiss-Prot
Match: RPOC2_POPAL (DNA-directed RNA polymerase subunit beta'' OS=Populus alba GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.378e-71
Identity = 136/170 (80.00%), Postives = 145/170 (85.29%), Query Frame = 1
Query:    4 QGVXXHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERMGRALEEVICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVHCSRQHNNILLERQKGNLFGGEMRDIFLHHRELFDSCISTTFHDTSEHN 513
            QGV  HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRAER  RALEE ICYR + LGITRASL+TQSFISEASFQET RVLAKAALRGRIDWLKGLKENVVLGG+IPVGTGFKGL H S QH  I  + +K NLF GEMRDI  HHRELFDSCIS  F++ SE +
Sbjct: 1214 QGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERAMRALEEAICYRTVFLGITRASLSTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLAHRSSQHKIIPFKIKKKNLFAGEMRDILFHHRELFDSCISKNFYNISEQS 1383          
The following BLAST results are available for this feature:
BLAST of CK937331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC2_DIOEL2.604e-7282.35DNA-directed RNA polymerase subunit beta'' OS=Dios... [more]
RPOC2_AMBTC2.604e-7282.74DNA-directed RNA polymerase subunit beta'' OS=Ambo... [more]
RPOC2_OENPA5.802e-7280.59DNA-directed RNA polymerase subunit beta'' OS=Oeno... [more]
RPOC2_OENGL5.802e-7280.59DNA-directed RNA polymerase subunit beta'' OS=Oeno... [more]
RPOC2_OENEH5.802e-7280.59DNA-directed RNA polymerase subunit beta'' OS=Oeno... [more]
RPOC2_OENBI5.802e-7280.59DNA-directed RNA polymerase subunit beta'' OS=Oeno... [more]
RPOC2_OENAR5.802e-7280.59DNA-directed RNA polymerase subunit beta'' OS=Oeno... [more]
RPOC2_RANMC1.688e-7183.33DNA-directed RNA polymerase subunit beta'' OS=Ranu... [more]
RPOC2_POPTR8.378e-7180.00DNA-directed RNA polymerase subunit beta'' OS=Popu... [more]
RPOC2_POPAL8.378e-7180.00DNA-directed RNA polymerase subunit beta'' OS=Popu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004511_C03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937331 ID=CK937331; Name=CK937331; organism=Citrus sinensis; type=EST; length=761bp
GGGCAGGGGGTGCANNNCCATAATAGGCATATAGAAATTATTGTACGTCA
AATAACATCAAAAGTTTTAGTTTCCGAAGATGGAATGTCTAATATTTTTT
TACCCGGCGAACTGATTGGATTGTTACGAGCGGAACGAATGGGGCGCGCT
TTGGAAGAAGTGATCTGTTATCGAGCTATCTTATTGGGAATAACGAGAGC
GTCTCTGAATACTCAAAGTTTTATATCCGAAGCAAGTTTTCAAGAAACCA
CGCGAGTTTTAGCAAAAGCTGCTCTCCGAGGTCGTATCGATTGGTTGAAA
GGCCTGAAAGAAAACGTTGTTCTGGGGGGGATAATACCAGTCGGTACCGG
ATTCAAAGGATTAGTCCACTGTTCAAGGCAGCATAACAACATTCTTTTGG
AAAGACAAAAAGGGAATTTATTCGGGGGGGAAATGAGAGATATTTTCTTA
CACCACAGAGAATTATTTGACTCGTGCATTTCAACGACTTTCCATGATAC
ATCAGAGCACAATTGCTTAGAGGGTTTAATGAGTCCTAGGAGCGAATTCT
TTTAACTATTTGTGATCATTTGATTTTTTAATGGTACGAAAAGAAAGATA
ATAATGAATAGAACGAAGGATAATAATGAATAGAAAGTAATGAATGGCCT
GGGTCGTGTATCAATGGTCACTCTCTGGTAGAAGAGAAGGTTCCCTCGGA
ACAATTATTTATTTCAGGGCGCCTCGTCTCTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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