CX046919

Overview
NameCX046919
Unique NameCX046919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.417e-28
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   14 AITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.157e-28
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 2
Query:   14 AITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.123e-28
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   14 AITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            AI+CG VTG L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.385e-28
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   14 AITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS +T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.033e-28
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 2
Query:   17 ITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 286
            +TCGQVTG+LAPC+ YLRS   +PVP  CCN VR LN AARTT D++TAC CLKQ A ++  LN N A GLP  CGV+IPYKIS +TDC++V
Sbjct:   28 LTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.033e-28
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 2
Query:    5 SAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            S  A++CG V+G +APCI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   23 SNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.186e-28
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 2
Query:    2 LSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            ++  AITCG+V  +LAPC+ YL+ G      CC GVR+LN+AA TTPDRQ ACNCLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C+ +R
Sbjct:   20 MAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.200e-27
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    8 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 286
            A AI+CGQVT  L PC  YL +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +N NNA  LP  CG+SI YKI+ + DCSK+
Sbjct:   23 ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.567e-27
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 2
Query:   14 AITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            A++CG V+G+LA CI YL   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P LN   A GLP+ACGV+IPYKIS ST+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX046919 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.046e-27
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 2
Query:   14 AITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 289
            A++CG V+G+LA CI YL   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C+ V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
The following BLAST results are available for this feature:
BLAST of CX046919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP4_LENCU2.417e-2865.59Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU3.157e-2865.59Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP5_LENCU4.123e-2864.52Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP2_LENCU5.385e-2864.52Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_DAUCA7.033e-2864.13Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP2_BRANA7.033e-2861.05Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP_CICAR9.186e-2860.42Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP_GERHY1.200e-2760.22Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTPB_BRAOT1.567e-2761.96Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP3_BRANA2.046e-2758.70Non-specific lipid-transfer protein 3 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046919 ID=CX046919; Name=CX046919; organism=Citrus sinensis; type=EST; length=522bp
CCTGAGTGCTCAGGCCATAACATGTGGGCAGGTGACTGGCTCATTGGCAC
CATGCATCGTTTACTTGAGATCGGGCGGCCCTATACCTGTGCCATGCTGC
AACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCA
AACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCTAACCTCA
ACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGCATTCCT
TACAAGATCAGCATCTCCACTGACTGCTCTAAGGTCCGGTGAACAGGAAT
CTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAAATGTATA
ATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTACACTTTG
TACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTATTGTCTT
TGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTAAATGAAA
TCTTGCCTTGTGTTCAAAAAAA
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