CK937249

Overview
NameCK937249
Unique NameCK937249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.999e-25
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE VRS++M GL WGASKLVPVGYGIKKLQI   + DD V  D ++EE++TA    +++QS D+ AFNKI
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEENITA--FEDFVQSMDVAAFNKI 228          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.917e-25
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA   +EY+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FDEYVQSMDVAAFNKI 225          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 5.116e-25
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            VLLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI KLQIM  I DD VS+D L E+    E   +++QS DI AFNKI
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK---IEEFEDFVQSVDIAAFNKI 222          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.116e-25
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI KLQIM  I DD VSVD L E+    +   +++QS DI AFNKI
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 222          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.140e-24
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE VR+V+M GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +T     +Y+QS DI AFNKI
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-ILEEEIT--KFEDYVQSVDIAAFNKI 265          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 114.005 bits (284), Expect = 1.140e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 1.140e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 1.140e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.488e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +Y+QS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225          
BLAST of CK937249 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 2.539e-24
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  494 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 754
            +LLDVKPWDDETDM KLEE +RS++M GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +TA    +++QS D+ AFNKI
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEEKITA--FEDFVQSMDVAAFNKI 227          
The following BLAST results are available for this feature:
BLAST of CK937249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_XENTR2.999e-2565.52Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_BOVIN3.917e-2565.52Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_DROME5.116e-2566.67Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B2_BOMMO5.116e-2565.52Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1D_XENLA1.140e-2465.52Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_MOUSE1.140e-2464.37Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN1.140e-2464.37Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK1.140e-2464.37Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_RABIT1.488e-2464.37Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]
EF1B_XENLA2.539e-2463.22Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004512_D01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937249 ID=CK937249; Name=CK937249; organism=Citrus sinensis; type=EST; length=878bp
GGGGAATCGCAAAAGTAGGAAGCGATTATCCTGTGTTGAAGTTGTGCGTC
TCTTCTTGCCTCTGCCTTGATTTGAAGACCAAAATGGCCATCACTTTTTC
GGATCTCCACACAGAGTCAGGCCTTAAGTCTCTCGATCAGTATCTTTCTG
GGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCAAGGTC
TACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCCAGCAG
CTGGTACGACAGCGTTTCTTCACGTCTCGCCCCAAGCTTCCCTGGCAAAG
CCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCAGTTGACGCCGCCGCAG
CCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGATCTCTTT
GGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAGGCTGC
TAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGTACTTT
TGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTAGAAGAG
GCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATT
GGTCCCAGTCGGTTATGGGATTAAGAAGCTGCAAATCATGATTACAATCG
TTGACGATCTTGTTTCTGTGGATTCACTGATAGAGGAACACCTCACAGCT
GAGCCCTGCAATGAGTATATTCAGAGCTGCGACATCGTCGCCTTCAATAA
AATTTAAGAATCCTCTCATTGTTTTGCCTTATAGTGCAGCCATTTTTGGC
TGCAATTTAGTTTTTGTCGTTTTAATTGNNNTCTGCTTTTTAATGGGTTT
GCTTGGCCTGCATTTTCCGTTGCTAAAT
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