CK937248

Overview
NameCK937248
Unique NameCK937248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.623e-17
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGS--KSAKMN-----IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSG----SMAGATAQTFIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKILKYEGMGAFYKGY 347          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.037e-17
Identity = 60/203 (29.56%), Postives = 99/203 (48.77%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            FW  S G  +     +   F +   EK    +    L GG++ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGS--KSDKMN-----IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGLGAFYKGY 347          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.675e-16
Identity = 60/203 (29.56%), Postives = 98/203 (48.28%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q     +   +  + + G    F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA     AK G   Q++G+    KK LK +G    Y+G+
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISG----SMAGATAQTFIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEGFGAFYKGY 345          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.139e-15
Identity = 55/203 (27.09%), Postives = 97/203 (47.78%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            FW  S G  +     +   F +   E+    +    L GG++ AVS+T+ AP++R+K+++Q     +   +  + + G    F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G    Y+G+
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--EERKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEGFGAFYKGY 345          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.147e-14
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 3
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            EK    +    + GG++ AVS+T  AP++R+K+++Q            H  KG S+      + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+
Sbjct:  188 EKKTGQWWKQLMAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGSKGNSNIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTS----IYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGIRAFYKGY 346          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.804e-14
Identity = 55/182 (30.22%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            EK    +    L GG++ AVS+T  AP++R+K+++Q            H  KG S+      + VK+ G+ SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+
Sbjct:  188 EKKTGQWWKHLLAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGTKGNSNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQKEGILAFYKGY 346          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14
Identity = 58/198 (29.29%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  219 GTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFS 812
            GT   L SPV      +   K+  S L   + G ++ AV+KTA AP++R K++ Q     + S R S   K       RT  +EG LSLWRGN+A ++R  P  A+ F   + +K+L        G                       Y LD  R R+A   K         ++ +I V+ +  + +G+  LYRGF+
Sbjct:   16 GTHAILPSPVV-----SEGHKNHKSILNSLMSGALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSA--KEAYRLIYRTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATIITYPLDLVRARMAVTPK-------EMYSNIIHVFMRMSREEGLKSLYRGFT 194          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.248e-14
Identity = 54/182 (29.67%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            EK    +    L GG++ AVS+T  AP++R+K+++Q            H  KG ++      + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  KK ++ +G+   Y+G+
Sbjct:  188 EKKTGQWWKQLLAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGSKGNANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQREGVRAFYKGY 346          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.160e-14
Identity = 52/179 (29.05%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNF-AFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 809
            EK+   +      GGV+ AVS+T  AP++R+K+ +Q      K+ ++S     + + F + +K+ G+ SLWRGN  NVI+  P  A+ F A++ Y K L         + ++ AG+              +Y ++  +TRL       +K G  Q++G+ D  KK L+ +G+   Y+G+
Sbjct:  189 EKTTGMWWKQLAAGGVAGAVSRTGTAPLDRMKVFMQVHSS--KTNKIS-----LVNGFKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLSKDGGKVQSHERFMAGSLAGATAQTA-----IYPMEVMKTRL-----TLRKTG--QYSGMFDCAKKILRKEGVKAFYKGY 348          
BLAST of CK937248 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.160e-14
Identity = 65/209 (31.10%), Postives = 92/209 (44.02%), Query Frame = 3
Query:  207 AASQGTGLALVSPVSPIFVQA-----PSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYK--GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKT-LKSDGIAGLYRG 806
            AA+    LA   P  P   QA     P+ +    +L  FL GG++   +KT  AP++RVK+L+Q  +         H YK  G+        + EG L L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G+I  +K    K  G  G YRG
Sbjct:    3 AATAAAALAAADP-PPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHN---------HHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHSYTGIIHAFKTIYAKEGGFFGFYRG 191          
The following BLAST results are available for this feature:
BLAST of CK937248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SCMC1_BOVIN4.623e-1730.05Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN6.037e-1729.56Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE6.675e-1629.56Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT1.139e-1527.09Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA2.147e-1429.28Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA2.804e-1430.22Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENTR3.663e-1429.29Solute carrier family 25 member 42 OS=Xenopus trop... [more]
SCMC1_XENTR6.248e-1429.67Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_DANRE8.160e-1429.05Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_HUMAN8.160e-1431.10Graves disease carrier protein OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004512_E08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937248 ID=CK937248; Name=CK937248; organism=Citrus sinensis; type=EST; length=821bp
GGGGACATTACGGAGGTCTCACACTAGGCGACCTTCTCAGGTCACCATCT
TCAGCTGCAAACATGGCAGATGGATCGTATCCATCCGTATTTCAGAAAAT
GCAAGGCCAGTCATACTTCATTTCTGGGGTCTCCCCCAATTTGTATGCCC
ACAACTACAGTGTGGCAGGTTCCTTTGTTAATAGAGGATCACAGAATTCT
TTTTGGGCAGCAAGTCAGGGAACTGGCCTGGCACTTGTGTCTCCTGTTTC
TCCTATATTCGTACAAGCTCCATCAGAAAAAAGTCTTTCTTCTTTTTTGG
TGGATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTTCCAAGACTGCAGCT
GCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGAT
CAAGAGTGGTCGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTG
GTAGAACTGTTAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACT
GCCAATGTTATCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAA
GGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACT
GGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGGGCTGCTGGTGCTTCA
TCGCTTCTTTTTGTGTATTCGCTTGACTATGCAAGAACACGTTTGGCAAA
TGATGCTAAGGCAGCTAAAAAGGGTGGGGAAAGGCAGTTTAATGGTTTGA
TTGATGTCTACAAGAAGACTCTGAAATCTGATGGCATTGCTGGGCTCTAC
CGTGGATTCAGCATCTCATGT
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