CK937243

Overview
NameCK937243
Unique NameCK937243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_VIBPA (Nucleoside diphosphate kinase OS=Vibrio parahaemolyticus GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWFPDGPI 485
            +E+TF ++KPD V+R L+GEI  R EK G  +   K++ +    A   Y +   K FF  L E++TSGP++  + EGE  +   R ++G TNP ++A GT+R D A+    N +HGSDS +SA +EI  +FP+  I
Sbjct:    3 LERTFSIVKPDAVERNLIGEIYNRIEKAGLRIIAAKMVHLTEEQASGFYAEHEGKEFFQPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAAAGTLRADYALSMRHNSVHGSDSPESAAREIEFFFPESEI 138          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_VEREI (Nucleoside diphosphate kinase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWFP 473
            +E+T  +IKPD V + ++G+I  RFE  G  +   +++ + RP AE+ Y     +PFF  L+E++ SGPV+  + EGE  V   R ++GAT+P ++  GTIR D A     N +HGSD+ ++AQ E+A +FP
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKIVAARMVHLARPEAERFYAVHKERPFFKDLVEFMISGPVMVQVLEGENAVLKNRELMGATDPKKAQTGTIRADFADSIDANAVHGSDAAETAQAEVAFFFP 134          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_SILST (Nucleoside diphosphate kinase OS=Silicibacter sp. (strain TM1040) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 56/131 (42.75%), Postives = 83/131 (63.36%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWF 470
            +E+TF +IKPD  +R L G I  +FE+ G  +   K + + +  A K Y   + +PF+  L E+++S PVV  + EGEG +   R I+GATNPA +APGTIR + A   G N +HGSD+ ++A +EIA +F
Sbjct:    3 LERTFSIIKPDATRRNLTGAINAKFEEAGLRIVAQKRIHMTKAQAGKFYAVHAERPFYDELCEFMSSAPVVVQVLEGEGAIAKNREIMGATNPADAAPGTIRAEFAESVGENSVHGSDAPETAAEEIAYFF 133          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_CHLCV (Nucleoside diphosphate kinase OS=Chlamydophila caviae GN=ndk PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWF 470
            MEQT  +IKPD V +  +GEI+  FEK GF +  +K++ +    AE  Y    S+PFF  L++++ SGPVV M+ EG+  V   R I+GATNP ++A GTIR       G N +HGSDS+++A  EI  +F
Sbjct:    1 MEQTLSIIKPDSVGKAHIGEIVAIFEKSGFRIAAMKMVHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGDNAVVRNREIMGATNPQEAAQGTIRAQFGESIGINAVHGSDSLENAAIEINYFF 131          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_THIDA (Nucleoside diphosphate kinase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWFP 473
            +++TF +IKPD V + ++G+I+ RFE  G  +   K+  + R  AE  Y     +PFF  L++++ SGPVV  + EGE  +   RT++GAT+P ++ PGTIR D A     N +HGSD+ ++A  EIA +FP
Sbjct:    3 VQRTFSIIKPDAVAKNVIGKIVSRFETNGLKVVASKMKHLSRQEAEGFYAVHKDRPFFKDLVDFMVSGPVVLQVLEGEDAIAKNRTLMGATDPKKAEPGTIRADFAESIDANAVHGSDAPETAAVEIAYFFP 134          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_AGRRK (Nucleoside diphosphate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWFPDGPI 485
            +E+TF MIKPD  +R L G I   FE  G  +   K + + +  AE  Y     +PFFG L++ +TSGP V  + EGEG +   R I+GATNPA +A GTIR   A+  G N +HGSD+ ++A  EIA WF +  I
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKIFEDNGLRVIASKRVWMSKREAEGFYAVHKERPFFGELVDGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKIHALSIGENSVHGSDAPETAAVEIAYWFSETEI 138          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_ACISJ (Nucleoside diphosphate kinase OS=Acidovorax sp. (strain JS42) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWFP 473
            +E+T  +IKPD V + ++G+I  RFE  G  +   +++ + R  AE+ Y     +PFF  L++++ SGPV+    EGE  V   R ++GAT+P ++APGTIR D A     N +HGSD+ ++AQ E+A +FP
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKIAAARMIHLSRAEAEQFYAVHKERPFFKDLVDFMISGPVMVQALEGENAVLKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVAFFFP 134          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_WOLWR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWFPD 476
            +E+T  ++KPD V+  + G+I    E  G  +   K+M + +  AE  YE    +PFFG L+E++TSG V+  +  GE  V   R I+GATNP Q+  GTIRGD A +   N +HGSDS+++A+KEIA +F +
Sbjct:    3 IEKTLSILKPDAVKNNITGKINSYIESSGLKIIAQKMMLLTKKQAELFYEIHKDRPFFGELVEFMTSGSVIVQVLVGENAVSKYRQIMGATNPKQADKGTIRGDFADDISENRVHGSDSLENARKEIAFFFAE 135          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_WOLTR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWFPD 476
            +E+T  ++KPD V+  ++G I    EK G  +   K+M + +  AE  Y     +PFFG L+E++TSGPV+  +  GE  +   R I+GAT+P Q+  GTIRGD A +   N +HGSDS+++A KEIA +F +
Sbjct:    3 IERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAE 135          
BLAST of CK937243 vs. ExPASy Swiss-Prot
Match: NDK_SINMW (Nucleoside diphosphate kinase OS=Sinorhizobium medicae (strain WSM419) GN=ndk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 3
Query:   78 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIETGRNIIHGSDSVDSAQKEIALWF 470
            +E+TF MIKPD  +R L G I    E  G  +   K + + R  AE  Y     +PFFG L+E+++SGP V  + EGE  +   R ++GATNPA +A GTIR   A+  G N +HGSD+ ++A +EIA WF
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEFMSSGPTVVQVLEGENAIAKNREVMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAEEIAYWF 133          
The following BLAST results are available for this feature:
BLAST of CK937243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_VIBPA1.837e-2540.44Nucleoside diphosphate kinase OS=Vibrio parahaemol... [more]
NDK_VEREI1.837e-2540.15Nucleoside diphosphate kinase OS=Verminephrobacter... [more]
NDK_SILST1.837e-2542.75Nucleoside diphosphate kinase OS=Silicibacter sp. ... [more]
NDK_CHLCV1.837e-2544.27Nucleoside diphosphate kinase OS=Chlamydophila cav... [more]
NDK_THIDA2.399e-2540.91Nucleoside diphosphate kinase OS=Thiobacillus deni... [more]
NDK_AGRRK2.399e-2544.12Nucleoside diphosphate kinase OS=Agrobacterium rad... [more]
NDK_ACISJ2.399e-2540.15Nucleoside diphosphate kinase OS=Acidovorax sp. (s... [more]
NDK_WOLWR3.133e-2542.11Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_WOLTR3.133e-2541.35Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_SINMW3.133e-2543.51Nucleoside diphosphate kinase OS=Sinorhizobium med... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004512_E02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IIIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937243 ID=CK937243; Name=CK937243; organism=Citrus sinensis; type=EST; length=658bp
AGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAAC
AAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGAT
CAAGCCCGATGGGGTCCAAAGGGGCCTTGTTGGTGAAATCATCATCAGAT
TTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGAC
CGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTT
TGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTT
GGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACC
AACCCTGCGCAGTCTGCTCCTGGAACCATCCGAGGTGATTTGGCTATCGA
GACGGGCAGGAATATCATCCATGGAAGTGACTCAGTTGACAGTGCCCAGA
AAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGC
CTTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAAT
TGTTCCTGNAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTA
TGGTTACTCCTTGTTGGTGAACTGTTATGAACTATTGAGTTAAATTGAGA
CCAATCCT
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