CK937173

Overview
NameCK937173
Unique NameCK937173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937173 vs. ExPASy Swiss-Prot
Match: GDL41_ARATH (GDSL esterase/lipase At2g30220 OS=Arabidopsis thaliana GN=At2g30220 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 51/173 (29.48%), Postives = 84/173 (48.55%), Query Frame = 2
Query:    5 GIDFPTKKPTGRFSNGKNAADFIAEKVGLPS-SPPYLAVKSNKNKASFLTGVSFASGGAGIFNSSDQSLAQSITLTKQVDYYGTVHKDLVQQMGPSAAQEHLSKSLFAIVVGSNDISDYSGKSDLRKKSTPE--QFVNLMAATLKGQLKRLYGYGARKFVCVXLGVIGCIPAQ 514
            G+D P  +  GRFSNGK  +D I+ K+ +    PP+L  + N +    +TGV FAS GAG  + +  S +++I +++Q   +      L   +G   A E ++ +L  I  G ND         +R+   P    + + +   L G ++ LY  G R  +   L  +GC+P Q
Sbjct:   63 GVDLPGHEANGRFSNGKLISDVISTKLNIKEFVPPFL--QPNISDQDIVTGVCFASAGAGYDDETSLS-SKAIPVSQQPSMFKNYIARLKGIVGDKKAMEIINNALVVISAGPNDFILNFYDIPIRRLEYPTIYGYQDFVLKRLDGFVRELYSLGCRNILVGGLPPMGCLPIQ 232          
BLAST of CK937173 vs. ExPASy Swiss-Prot
Match: GDL19_ARATH (GDSL esterase/lipase At1g54010 OS=Arabidopsis thaliana GN=At1g54010 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 2
Query:   29 PTGRFSNGKNAADFIAEKVGLPSS-PPYLAVKSNKNKASFLTGVSFASGGAGIFNSSDQSLAQSITLTKQVDYYGTVHKDLVQQMGPSAAQEHLSKSLFAIVVGSNDISDYSGKSDLRKKSTPEQFVNLMAATLKGQLKRLYGYGARKFVCVXLGVIGCIPAQR 517
            P G+FS+G  A DF+A+ + +P   PP L    N ++     G SFA   A +  +      +S+TL +QV  +        Q    +   + + KS+F I +G+ND  +++  +     ST + FV  +   LK  +  LY  GA KFV   L  +GC+P  R
Sbjct:   72 PNGKFSDGLIAPDFLAKFMRIPIVIPPALQPNVNVSR-----GASFAVADATLLGAP----VESLTLNQQVRKFN-------QMKAANWNDDFVKKSVFMIYIGANDYLNFTKNNPNADASTQQAFVTSVTNKLKNDISLLYSSGASKFVIQTLAPLGCLPIVR 219          
BLAST of CK937173 vs. ExPASy Swiss-Prot
Match: GDL44_ARATH (GDSL esterase/lipase At2g31550 OS=Arabidopsis thaliana GN=At2g31550 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 2
Query:    5 GIDFPTKKPTGRFSNGKNAADFIAEKVGLPS-SPPYLAVKSNKNKASFLTGVSFASGGAGIFNSSDQSLAQSITLTKQVDYYGTVHKDLVQQMGPSAAQEHLSKSLFAIVVGSND--ISDYSGKSDLRKKSTPEQFVNLMAATLKGQLKRLYGYGARKFVCVXLGVIGCIP 508
            G+D P  K  GRFSNGK  +D IA K+ +    PP+L  + N +    LTGV FAS GAG  + +  S  Q+I +++Q + + +    L   +G   A E ++ +   +  G ND  ++ Y   S   +      + + +   L+  ++ LY  G R  +   L  +GC+P
Sbjct:   65 GMDLPDGKANGRFSNGKLISDIIATKLNIKEFIPPFL--QPNLSDQDILTGVCFASAGAGYDDLTSLS-TQAIRVSEQPNMFKSYIARLKGIVGDKKAMEIINNAFVVVSAGPNDFILNYYDIPSRRLEYPFISGYQDFILKRLENFVRELYSLGVRNVLVGGLPPMGCLP 232          
BLAST of CK937173 vs. ExPASy Swiss-Prot
Match: GDL43_ARATH (GDSL esterase/lipase At2g31540 OS=Arabidopsis thaliana GN=At2g31540 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 2
Query:    5 GIDFPTKKPTGRFSNGKNAADFIAEKVGLPS-SPPYLAVKSNKNKASFLTGVSFASGGAGIFNSSDQSLAQSITLTKQVDYYGTVHKDLVQQMGPSAAQEHLSKSLFAIVVGSND--ISDYSGKSDLRKKSTPEQFVNLMAATLKGQLKRLYGYGARKFVCVXLGVIGCIP 508
            G+D P  K  GRFSNGK  +D IA K+ +    PP+L  + N +    LTGV FAS GAG  + +  S  Q+I +++Q + + +    L   +G   A E ++ +   +  G ND  ++ Y   S   +      + + +   L+  ++ LY  G R  +   L  +GC+P
Sbjct:   65 GMDLPDGKANGRFSNGKLISDIIATKLNIKEFIPPFL--QPNLSDQDILTGVCFASAGAGYDDLTSLS-TQAIRVSEQPNMFKSYIARLKGIVGDKKAMEIINNAFVVVSAGPNDFILNYYEIPSRRLEYPFISGYQDFILKRLENFVRELYSLGVRNVLVGGLPPMGCLP 232          
BLAST of CK937173 vs. ExPASy Swiss-Prot
Match: GDL18_ARATH (GDSL esterase/lipase At1g54000 OS=Arabidopsis thaliana GN=At1g54000 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 51/165 (30.91%), Postives = 81/165 (49.09%), Query Frame = 2
Query:   29 PTGRFSNGKNAADFIAE--KVGLPSSPPYLAVKSNKNKASFLTGVSFASGGAGIFNSSDQSLAQSITLTKQVDYYGTVHKDLVQQMGPSAAQEHLSKSLFAIVVGSNDISDYSGKSDLRKKSTPEQFVNLMAATLKGQLKRLYGYGARKFVCVXLGVIGCIPAQR 517
            P G+FS+G    DF+A+  K+ L  +P   A++ N N +    G SFA  GA +  +      +S+TL +QV       K   Q    +   + ++KS+F I +G+ND  +++  +     S  + FV  +   LK  +  LY  GA KFV   L  +GC+P  R
Sbjct:   72 PNGKFSDGLITPDFLAKFMKIPLAIAP---ALQPNVNVSR---GASFAVEGATLLGAP----VESMTLNQQV-------KKFNQMKAANWNDDFVAKSVFMIYIGANDYLNFTKNNPTADASAQQAFVTSVTNKLKNDISALYSSGASKFVIQTLAPLGCLPIVR 219          
The following BLAST results are available for this feature:
BLAST of CK937173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GDL41_ARATH4.337e-1229.48GDSL esterase/lipase At2g30220 OS=Arabidopsis thal... [more]
GDL19_ARATH4.337e-1230.49GDSL esterase/lipase At1g54010 OS=Arabidopsis thal... [more]
GDL44_ARATH7.397e-1229.82GDSL esterase/lipase At2g31550 OS=Arabidopsis thal... [more]
GDL43_ARATH7.397e-1229.82GDSL esterase/lipase At2g31540 OS=Arabidopsis thal... [more]
GDL18_ARATH9.661e-1230.91GDSL esterase/lipase At1g54000 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_E03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937173 ID=CK937173; Name=CK937173; organism=Citrus sinensis; type=EST; length=530bp
CAACGGAATCGATTTTCCGACGAAGAAACCCACCGGAAGGTTCAGTAACG
GAAAGAATGCTGCTGATTTTATTGCCGAGAAAGTGGGATTACCATCTTCA
CCACCATATCTTGCCGTCAAGTCAAACAAGAACAAGGCATCATTTCTAAC
TGGCGTTAGCTTTGCCTCTGGAGGTGCTGGAATCTTCAATAGCTCTGATC
AATCTCTTGCTCAATCAATTACTTTGACAAAACAAGTGGACTACTATGGT
ACTGTGCATAAAGATTTGGTGCAACAGATGGGACCCTCTGCTGCACAGGA
ACACTTGTCTAAATCTCTCTTTGCCATTGTGGTTGGAAGCAATGATATCT
CTGACTATTCTGGAAAGTCTGATCTTCGGAAGAAGAGCACGCCGGAGCAG
TTCGTCAATCTGATGGCTGCTACCCTCAAAGGACAGCTTAAGAGATTATA
TGGTTATGGTGCACGTAAATTTGTGTGTGTTNNNCTGGGGGTAATTGGAT
GTATTCCAGCACAAAGGATCAAGAGTCAAA
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