CK937172

Overview
NameCK937172
Unique NameCK937172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 69/242 (28.51%), Postives = 118/242 (48.76%), Query Frame = 3
Query:    9 VSASPAKVIQNAGKDSTRRSANYHPSIWGDHFLQYTCDTQETDDG--------SNVKHL--ELKKEIRRMLKADNKPSRTLQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDL-CDNEN--DELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTS----LAKDVRGMLSLYEATHLGVHEEDILDEALAFTTSHLESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            +S S   V+ + G    RR  ++H ++W D  +Q      E              VK++   +  E   ++   N   + L ++D+++RLG+  HF+ EI   L  ++    ++ + C  E+   +L   +L  R LR +GY +S+DVFK FK  +G F  S      +++RG+L+L+ A+ +    E I+DEA  F+T +L+        S L  ++   L    H  L RLEAR YI ++
Sbjct:   49 ISMSSTTVVTDDGV--RRRMGDFHSNLWDDDVIQSLPTAYEEKSYLERAEKLIGEVKNMFNSMSLEDGELMSPLNDLIQRLWIVDSLERLGIHRHFKDEIKSALDYVYSYWGENGIGCGRESVVTDLNSTALGLRTLRLHGYPVSSDVFKAFKGQNGQFSCSENIQTDEEIRGVLNLFRASLIAFPGEKIMDEAEIFSTKYLKEALQKIPVSSLSREIGDVLEYGWHTYLPRLEARNYIQVF 288          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 70/235 (29.79%), Postives = 116/235 (49.36%), Query Frame = 3
Query:   60 RRSANYHPSIWGDHFLQYTCDTQETDDGSNVKHLELKK---EIRRML-------KADNKPSRTLQLIDAIQRLGVSYHFESEIDEI-LGKMHKASQDSDLCDNEND----ELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLA-------KDVRGMLSLYEATHLGVHEEDILDEALAFTTSHLESI-ATH----QIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            RR+ N+H ++W D  +     +  +  G+   +  L+K   EI+ +L         D+   + LQ++D ++ LG+  HFE EI    L  +++   +  + +   D    +L   +L FR LR + Y +S+ V K FKD +G F  +         K VR MLSL  A+ +    E +++EA AFT  +L  + A H     +   L+ +VK+AL  P H  + R EAR ++ IY
Sbjct:   11 RRTGNHHGNVWDDDLIH----SLNSPYGAPAYYELLQKLIQEIKHLLLTEMEMDDGDHDLIKRLQIVDTLECLGIDRHFEHEIQTAALDYVYRWWNEKGIGEGSRDSFSKDLNATALGFRALRLHRYNVSSGVLKNFKDENGKFFCNFTGEEGRGDKQVRSMLSLLRASEISFPGEKVMEEAKAFTREYLNQVLAGHGDVTDVDQSLLREVKYALEFPWHCSVPRWEARSFLEIY 241          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 58/225 (25.78%), Postives = 113/225 (50.22%), Query Frame = 3
Query:   60 RRSANYHPSIWGDHFLQYTCDTQETDDGSNVKHLELKKEIRRMLKAD-----------NKPSRTLQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDL-CDNEN--DELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLA---KDVRGMLSLYEATHLGVHEEDILDEALAFTTSHLESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            RR  +YH ++W D F+Q +  T   +     +  +L  E++ M  +            N     L ++D+++RLG+  HF+ EI   L  ++    +  + C  ++   ++   +  FR LR +GY +S++V K F+D +G F  S +   +D+R +L+LY A+ +    E +++EA  F++ +L+        S L +++ + L    H  + RLE R Y+ ++
Sbjct:   62 RRIGDYHSNLWDDDFIQ-SLSTPYGEPSYRERAEKLIGEVKEMFNSMPSEDGESMSPLNDLIERLWMVDSVERLGIDRHFKKEIKSALDYVYSYWNEKGIGCGRDSVFPDVNSTASGFRTLRLHGYSVSSEVLKVFQDQNGQFAFSPSTKERDIRTVLNLYRASFIAFPGEKVMEEAEIFSSRYLKEAVQKIPVSSLSQEIDYTLEYGWHTNMPRLETRNYLDVF 285          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 59/169 (34.91%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  219 LQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDLCD---NENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLA---KDVRGMLSLYEATHLGVHEEDILDEALAFTTSHL-------ESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIYQ 686
            L ++D I RLG+  HFE EI E L  +++   +  +     N   +L   +L FRLLR + Y +S  +F  FKD +G F  S     KDV  ML+LY A+ L    E+ILDEA +F T +L       E+ +    +  L +++K+AL    H  + R+EA++Y  +Y+
Sbjct:  302 LLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR 470          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 70/252 (27.78%), Postives = 127/252 (50.40%), Query Frame = 3
Query:   12 SASPAKVIQNAGKDSTRRSANYHPSIWGDHFLQYTCDTQETDDGSNVKHLELKKEIRRMLKADNKPS---------RTLQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDLCDNEND----ELYYISLHFRLLRQNGYKISADVFKKFKDTDGNF----------KTSLAKDVRGMLSLYEATHLGVHEEDILDEALAFTTSHLESI-----ATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            S SP+  +++     T   +N H ++W D  +Q + ++         +  +L +EI+ +  +D   S         + L+++D ++ LG+  HF+ EI   L  +++   +  + +   D    +L   +L FR LR + Y +S+ V + F+D +G F            +  K VR MLSL  A+++    E +++EA AFTT++L+ +     ATH +   L+ +VK+AL  P H  +QR EAR +I I+
Sbjct:    7 SVSPSTDLKSTESSIT---SNRHGNMWEDDRIQ-SLNSPYGAPAYQERSEKLIEEIKLLFLSDMDDSCNDSDRDLIKRLEIVDTVECLGIDRHFQPEIKLALDYVYRCWNERGIGEGSRDSLKKDLNATALGFRALRLHRYNVSSGVLENFRDDNGQFFCGSTVEEEGAEAYNKHVRCMLSLSRASNILFPGEKVMEEAKAFTTNYLKKVLAGREATH-VDESLLGEVKYALEFPWHCSVQRWEARSFIEIF 253          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  225 LIDAIQRLGVSYHFESEIDEILGKMHKASQDSDLC---DNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKD---VRGMLSLYEATHLGVHEEDILDEALAFTTSHL-------ESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            ++D +QRLG+S +FE EI E L  +H+   D+ +C    +   ++   ++ FRLLRQ+GY++SADVFK F + +G F   + +    V GM +LY A+ L    E+IL  A  F+ ++L       E I    I   L  ++  AL  P +  L R+E R YI  Y
Sbjct:  334 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQY 498          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TASY_TAXBR (Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  219 LQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDLC---DNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAK---DVRGMLSLYEATHLGVHEEDILDEALAFTTSHL-ESIATH-QIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            L L+D I+ LG+  HF+ EI   L  +++   +  +    D+   +L   +L  R LR +GY +S+DV   FKD +G F +S  +   ++R +++L+ A+ L   +E  +D+A  F   +L E++AT     + L +++++ +  P H  + RLEAR YI  Y
Sbjct:  356 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSY 518          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TASY_TAXBA (Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 50/163 (30.67%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  219 LQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDLC---DNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAK---DVRGMLSLYEATHLGVHEEDILDEALAFTTSHL-ESIATH-QIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            L L+D I+ LG+  HF+ EI   L  +++   +  +    D+   +L   +L  R LR +GY +S+DV   FKD +G F +S  +   ++R +++L+ A+ L   +E  +D+A  F   +L +++AT     + L +++++ +  P H  + RLEAR YI  Y
Sbjct:  356 LSLVDNIEHLGIGRHFKQEIKVALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRTHGYDVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDEGAMDDARKFAEPYLRDALATKISTNTKLYKEIEYVVEYPWHMSIPRLEARSYIDSY 518          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 50/168 (29.76%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  219 LQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDLC---DNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKDVRG---MLSLYEATHLGVHEEDILDEALAFTTSHLESIATH-------QIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            L  +D ++RLG+ +HF+ EI + L  ++    +  +    +N   ++   ++  R+LR +GY +S+DV K F+D +G F   L +  RG   ML++   +H+    E I++EA   T  +L +            ++  +  +V++AL  P HR + RLEAR YI  Y
Sbjct:  338 LWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKLCTERYLRNALEDGGASDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIENY 505          
BLAST of CK937172 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 50/168 (29.76%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  219 LQLIDAIQRLGVSYHFESEIDEILGKMHKASQDSDLC---DNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKDVRG---MLSLYEATHLGVHEEDILDEALAFTTSHLESIATH-------QIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIY 683
            L  +D ++RLG+ +HF+ EI + L  ++    +  +    +N   ++   ++  R+LR +GY +S+DV K F+D +G F   L +  RG   ML++   +H+    E I+ EA   T  +L +            ++  +  +V++AL  P HR + RLEAR YI  Y
Sbjct:  355 LWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPIPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMQEAKLCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIEHY 522          
The following BLAST results are available for this feature:
BLAST of CK937172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
TPSD3_ABIGR1.378e-1828.51Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPSD4_ABIGR1.799e-1829.79Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
TPSD8_ABIGR8.929e-1825.78Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
TPSD1_ABIGR8.929e-1834.91Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
TPSD5_ABIGR1.989e-1727.78Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]
KSA_ARATH1.289e-1635.54Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
TASY_TAXBR1.862e-1531.29Taxadiene synthase OS=Taxus brevifolia GN=TDC1 PE=... [more]
TASY_TAXBA5.417e-1530.67Taxadiene synthase OS=Taxus baccata GN=TDC1 PE=3 S... [more]
TPSD1_PINTA7.075e-1529.76Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TPSD2_PICAB1.207e-1429.76Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_E02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937172 ID=CK937172; Name=CK937172; organism=Citrus sinensis; type=EST; length=687bp
CTTTGGAAGTATCAGCCTCTCCTGCTAAAGTTATCCAAAATGCTGGGAAA
GATTCTACTCGTCGCTCTGCAAATTATCATCCAAGCATCTGGGGGGATCA
TTTCCTTCAATATACTTGTGACACCCAGGAAACTGATGATGGCAGCAATG
TAAAGCATCTAGAGCTGAAGAAAGAAATTAGAAGAATGCTAAAAGCTGAT
AACAAGCCTTCACGTACACTTCAATTGATTGATGCAATTCAGCGTTTAGG
AGTGTCTTACCATTTTGAAAGTGAGATTGATGAAATATTGGGAAAGATGC
ATAAGGCTTCCCAAGACTCTGATCTTTGTGATAATGAAAATGATGAGCTC
TATTATATCTCTCTTCATTTTCGATTACTTAGACAAAATGGCTATAAAAT
TTCCGCTGATGTGTTCAAAAAGTTCAAAGACACGGATGGGAACTTTAAAA
CATCTCTTGCGAAAGATGTTCGAGGAATGTTAAGCTTGTATGAAGCTACG
CATCTCGGGGTACATGAAGAAGATATACTAGATGAAGCGCTTGCTTTCAC
CACTAGTCACCTAGAGTCAATAGCGACTCATCAAATCAGGTCTCCACTTG
TTGAACAAGTCAAACATGCCTTAGTTCAGCCTATCCACAGGGGCTTACAA
AGGCTTGAGGCAAGACAGTACATTCCTATCTATCAAG
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