CK937170

Overview
NameCK937170
Unique NameCK937170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBT (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=msrB PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIK 403
            V KT+ EW+  LSPE++RI RQKGTEP  TG+Y      G Y C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  H+GHVF  E    PT  R+CVNS S++
Sbjct:    4 VNKTDREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBS (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain SDF) GN=msrB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIK 403
            V KT+ EW+  LSPE++RI RQKGTEP  TG+Y      G Y C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  H+GHVF  E    PT  R+CVNS S++
Sbjct:    4 VNKTDREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ACIBC (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain ACICU) GN=msrB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIK 403
            V KT+ EW+  LSPE++RI RQKGTEP  TG+Y      G Y C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  H+GHVF  E    PT  R+CVNS S++
Sbjct:    4 VNKTDREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ACIB5 (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain AB0057) GN=msrB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIK 403
            V KT+ EW+  LSPE++RI RQKGTEP  TG+Y      G Y C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  H+GHVF  E    PT  R+CVNS S++
Sbjct:    4 VNKTDREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ACIB3 (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter baumannii (strain AB307-0294) GN=msrB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 59/125 (47.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIK 403
            V KT+ EW+  LSPE++RI RQKGTEP  TG+Y      G Y C  CG  L+ S  K+DSGCGWP+F+  L G++   +        RTEI C  C  H+GHVF  E    PT  R+CVNS S++
Sbjct:    4 VNKTDREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQHGTYVCRCCGAELFSSDAKYDSGCGWPSFFRPLNGSVIDEHEDLTHGMVRTEIVCHDCEAHLGHVF--EDGPQPTGLRYCVNSASLQ 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_DROME (Methionine-R-sulfoxide reductase B1 OS=Drosophila melanogaster GN=SelR PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 64/159 (40.25%), Postives = 84/159 (52.83%), Query Frame = 2
Query:    2 GETNPMTXAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPD--------------PDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS 433
            G    M   ++ V   +EE R  L+P Q+++ ++ GTE   TG YNK Y  G Y C  C   L+ S TK+DSGCGWPAF + L  G +    D              P+  RTE+ CA C  HMGHVF  E    PT +R+C+NS SI+F+  D   SS
Sbjct:   38 GPAATMDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGGNILLLIAHPERIRTEVRCARCNAHMGHVF--EDGPKPTRKRYCINSASIEFVNADPATSS 194          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_HAHCH (Peptide methionine sulfoxide reductase msrB OS=Hahella chejuensis (strain KCTC 2396) GN=msrB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = 2
Query:   32 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPA 427
            D V+K+++EWR  L+ EQ+R+ R KGTE   TGEY      G Y C  CG  L+ S  K+DSGCGWP+F+  +    I    D      RTEI C+ C  H+GHVF  +    PT +R+CVNS S++F   D  A
Sbjct:    2 DKVKKSDQEWRQQLTDEQYRVTRGKGTERPFTGEYYDTKEAGVYVCVCCGEPLFTSENKYDSGCGWPSFWAPMDKEKITEEIDMSHMMVRTEILCSKCDAHLGHVF--DDGPQPTGQRYCVNSASLRFHSADGDA 134          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_TERTT (Peptide methionine sulfoxide reductase msrB OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=msrB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.839e-24
Identity = 61/129 (47.29%), Postives = 78/129 (60.47%), Query Frame = 2
Query:   29 ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            +D   K ++ WR+ L+ E+FRI R+KGTE   +G+Y      G Y C  C T L+KS+ KFD+GCGWP+F+E L  G I    D      RTEI C ACG H+GHVF       PT  R+CVNS SI+F
Sbjct:    2 SDHNLKDDDYWRSKLTDEEFRICREKGTEMPFSGKYVDTTEAGTYLCRCCNTPLFKSLAKFDAGCGWPSFFEPLEKGVITEEMDTSLGMVRTEIMCEACGCHLGHVFTDG--PQPTGLRYCVNSASIQF 128          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_RALSO (Peptide methionine sulfoxide reductase msrB OS=Ralstonia solanacearum GN=msrB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 2
Query:   35 SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI--NRSPDPDGR-RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            +++KT+ EWR  LS  ++R+ R+  TE   TG Y   +A G Y+C  CGT L++S TKFD+GCGWP+++  + G +   ++    G  R E+ C  CG H+GHVF  E    PT  R+C+NS ++KF
Sbjct:    2 TIEKTDAEWRDQLSDIEYRVTREAATERPFTGRYWDHWARGIYHCVCCGTPLFESSTKFDAGCGWPSYFAPINGEVIAEKTDHSHGMVRIEVQCKQCGAHLGHVF--EDGPAPTGLRYCINSAALKF 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB1_RHIME (Peptide methionine sulfoxide reductase msrB 1 OS=Rhizobium meliloti GN=msrB1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 58/126 (46.03%), Postives = 75/126 (59.52%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDGR--RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            + KT EEWRA L+PEQ+R+ R+ GTE   TG +      G Y C  CG AL++S TKFDSGCGWP+++  + P AI    D      RTEI CA C  H+GHVF       PT  R+C+N  ++ F
Sbjct:    9 ITKTNEEWRAALTPEQYRVTREHGTERPFTGPFLDNKRHGTYKCVCCGRALFRSDTKFDSGCGWPSYFAPVDPDAIAEYVDRSHLMVRTEIRCADCDAHLGHVFPDG--PPPTGLRYCLNGTAMTF 132          
The following BLAST results are available for this feature:
BLAST of CK937170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
MSRB_ACIBT1.664e-2547.20Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIBS1.664e-2547.20Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIBC1.664e-2547.20Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIB51.664e-2547.20Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_ACIB31.664e-2547.20Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_DROME6.322e-2540.25Methionine-R-sulfoxide reductase B1 OS=Drosophila ... [more]
MSRB_HAHCH1.408e-2443.70Peptide methionine sulfoxide reductase msrB OS=Hah... [more]
MSRB_TERTT1.839e-2447.29Peptide methionine sulfoxide reductase msrB OS=Ter... [more]
MSRB_RALSO2.402e-2441.73Peptide methionine sulfoxide reductase msrB OS=Ral... [more]
MSRB1_RHIME3.137e-2446.03Peptide methionine sulfoxide reductase msrB 1 OS=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_D12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937170 ID=CK937170; Name=CK937170; organism=Citrus sinensis; type=EST; length=627bp
GGGGGAAACAAACCCCATGACNNNAGCAGCAGATTCCGTTCAGAAAACCG
AGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCAGTTTAGGATTCTACGC
CAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGTACAACAAGTTGTATGC
GGATGGGTTTTACAACTGTGCTGGCTGTGGAACTGCGCTTTATAAGTCTG
TCACCAAATTCGATTCTGGATGTGGGTGGCCAGCTTTCTATGAAGGTCTT
CCTGGAGCCATAAATCGCTCCCCTGATCCTGATGGAAGGAGAACCGAGAT
AACTTGTGCTGCTTGCGGGGGTCACATGGGTCACGTCTTCAAAGGGGAGG
GATTCAAAACGCCTACAGATGAACGCCACTGTGTCAATAGTGTTTCAATT
AAGTTTATTCCAGGTGATGCTCCTGCTTCATCATGAAGAATGTAAGACTG
TCATGGGGTTGTTGAATAAGATTTGACTGTTTGTCACTTCTGCCAATTGT
TTTTGGCTTTAATGTCCTAGACATGGTGTTGTTTGTATAATTATGACGCG
GCCAATATTAGCCTATGCCATAGTATAAACCACTTTGTTTGGTTTGCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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