CK937170

Overview
NameCK937170
Unique NameCK937170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_VIBVU (Peptide methionine sulfoxide reductase msrB OS=Vibrio vulnificus GN=msrB PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 2
Query:    5 ETNPMTXAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSP-------DPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            E + +T  +  V K++++WR  LS +++ + R++GTEP  +G+       G Y C  C   L+ SV K+DSGCGWP+F       IN +            +R EI CA C  H+GHVF  +G KT T ER CVNSVS+ F
Sbjct:   13 EISDVTKESKVVLKSDQQWREQLSEQEYHVCREQGTEPPFSGKLLHNKDSGEYACTCCHAPLFSSVNKYDSGCGWPSF----DAPINETAVLYLDDFSHGMKRVEIRCARCDSHLGHVFP-DGPKT-TGERFCVNSVSLIF 147          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_VIBCM (Peptide methionine sulfoxide reductase msrB OS=Vibrio cholerae serotype O1 (strain M66-2) GN=msrB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            + K +E WR  L+ E F + RQ+GTE   +G+       G Y+C  C +AL+ S  K+DSGCGWP+F   +   + R  D       RTEI CAAC  H+GHVF+ +G KT T  R CVNSVS+ F
Sbjct:   21 LHKPDEYWREHLTEEAFYVCRQQGTEAPYSGKLLHNKDTGLYHCTCCQSALFSSENKYDSGCGWPSFDAPINEQVIRFLDDFSHGMVRTEIRCAACDSHLGHVFE-DGPKT-TGLRFCVNSVSLIF 144          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_VIBCH (Peptide methionine sulfoxide reductase msrB OS=Vibrio cholerae GN=msrB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            + K +E WR  L+ E F + RQ+GTE   +G+       G Y+C  C +AL+ S  K+DSGCGWP+F   +   + R  D       RTEI CAAC  H+GHVF+ +G KT T  R CVNSVS+ F
Sbjct:   21 LHKPDEYWREHLTEEAFYVCRQQGTEAPYSGKLLHNKDTGLYHCTCCQSALFSSENKYDSGCGWPSFDAPINEQVIRFLDDFSHGMVRTEIRCAACDSHLGHVFE-DGPKT-TGLRFCVNSVSLIF 144          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_VIBC3 (Peptide methionine sulfoxide reductase msrB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=msrB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 2
Query:   38 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGR---RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            + K +E WR  L+ E F + RQ+GTE   +G+       G Y+C  C +AL+ S  K+DSGCGWP+F   +   + R  D       RTEI CAAC  H+GHVF+ +G KT T  R CVNSVS+ F
Sbjct:   21 LHKPDEYWREHLTEEAFYVCRQQGTEAPYSGKLLHNKDTGLYHCTCCQSALFSSENKYDSGCGWPSFDAPINEQVIRFLDDFSHGMVRTEIRCAACDSHLGHVFE-DGPKT-TGLRFCVNSVSLIF 144          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_VIBVY (Peptide methionine sulfoxide reductase msrB OS=Vibrio vulnificus (strain YJ016) GN=msrB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.748e-20
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 2
Query:    5 ETNPMTXAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSP-------DPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            E + +T  +  V K++++WR  LS +++ + R++GTEP  +G+       G Y C  C   L+ SV K+DSGCGWP+F       IN +            +R EI CA C  H+GHVF  +G KT T ER CVNSVS+ F
Sbjct:   13 EISDVTKESKVVLKSDQQWREQLSEQEYHVCREQGTEPPFSGKLLHNKDSGEYACTCCYAPLFSSVNKYDSGCGWPSF----DAPINETAVLYLDDFSHGMKRVEIRCARCDSHLGHVFP-DGPKT-TGERFCVNSVSLIF 147          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECO45 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE L     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPLSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_SALA4 (Peptide methionine sulfoxide reductase msrB OS=Salmonella agona (strain SL483) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.688e-20
Identity = 53/125 (42.40%), Postives = 68/125 (54.40%), Query Frame = 2
Query:   41 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            Q + EE +  LS  QF + + +GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  H+GHVF       PT ER+CVNS S+ F
Sbjct:    4 QPSAEELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDMPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLAF 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_BURS3 (Peptide methionine sulfoxide reductase msrB OS=Burkholderia sp. (strain 383) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.688e-20
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 2
Query:   41 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPDGR--RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            +K + E R  L+P Q+ + +   TE   TGEY     DG Y C  C T L++S +KF SGCGWP++++ L G  I+   D      R E+ C  CG H+GHVF+ +G +  T  R+C+NS ++ F
Sbjct:   13 EKDDAELRRRLTPMQYEVTQHAATERAFTGEYTDTEDDGIYKCVVCSTPLFESGSKFHSGCGWPSYFKPLNGEVIDEKVDYSHGMVRVEVRCNHCGAHLGHVFE-DGPRDQTGLRYCINSAALNF 136          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_SALAR (Peptide methionine sulfoxide reductase msrB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-20
Identity = 53/125 (42.40%), Postives = 68/125 (54.40%), Query Frame = 2
Query:   41 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDG---RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 406
            Q + EE +  LS  QF + + +GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FY+ +     R  D      +R EI C  C  H+GHVF       PT ER+CVNS S+ F
Sbjct:    4 QLSAEELKKKLSEMQFYVTQNRGTEPPFTGRLLHNKRDGVYHCLVCEAPLFHSHTKYDSGCGWPSFYQPVSKEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLAF 126          
BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_SHISS (Peptide methionine sulfoxide reductase msrB OS=Shigella sonnei (strain Ss046) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130          
The following BLAST results are available for this feature:
BLAST of CK937170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
MSRB_VIBVU2.104e-2039.72Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_VIBCM2.104e-2044.44Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_VIBCH2.104e-2044.44Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_VIBC32.104e-2044.44Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_VIBVY2.748e-2039.72Peptide methionine sulfoxide reductase msrB OS=Vib... [more]
MSRB_ECO453.590e-2043.20Peptide methionine sulfoxide reductase msrB OS=Esc... [more]
MSRB_SALA44.688e-2042.40Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_BURS34.688e-2039.20Peptide methionine sulfoxide reductase msrB OS=Bur... [more]
MSRB_SALAR6.123e-2042.40Peptide methionine sulfoxide reductase msrB OS=Sal... [more]
MSRB_SHISS7.997e-2042.40Peptide methionine sulfoxide reductase msrB OS=Shi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_D12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937170 ID=CK937170; Name=CK937170; organism=Citrus sinensis; type=EST; length=627bp
GGGGGAAACAAACCCCATGACNNNAGCAGCAGATTCCGTTCAGAAAACCG
AGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCAGTTTAGGATTCTACGC
CAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGTACAACAAGTTGTATGC
GGATGGGTTTTACAACTGTGCTGGCTGTGGAACTGCGCTTTATAAGTCTG
TCACCAAATTCGATTCTGGATGTGGGTGGCCAGCTTTCTATGAAGGTCTT
CCTGGAGCCATAAATCGCTCCCCTGATCCTGATGGAAGGAGAACCGAGAT
AACTTGTGCTGCTTGCGGGGGTCACATGGGTCACGTCTTCAAAGGGGAGG
GATTCAAAACGCCTACAGATGAACGCCACTGTGTCAATAGTGTTTCAATT
AAGTTTATTCCAGGTGATGCTCCTGCTTCATCATGAAGAATGTAAGACTG
TCATGGGGTTGTTGAATAAGATTTGACTGTTTGTCACTTCTGCCAATTGT
TTTTGGCTTTAATGTCCTAGACATGGTGTTGTTTGTATAATTATGACGCG
GCCAATATTAGCCTATGCCATAGTATAAACCACTTTGTTTGGTTTGCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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