CK937170 | Citrus Genome Database

Overview


Name	CK937170
Unique Name	CK937170
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	627

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECOL5 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECOHS (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O9:H4 (strain HS) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECODH (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli (strain K12 / DH10B) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECOBW (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli (strain K12 / BW2952) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECO8A (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O8 (strain IAI1) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECO7I (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECO5E (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECO57 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O157:H7 GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECO55 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli (strain 55989 / EAEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

[Close]

BLAST of CK937170 vs. ExPASy Swiss-Prot
Match: MSRB_ECO27 (Peptide methionine sulfoxide reductase msrB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 53/125 (42.40%), Postives = 67/125 (53.60%), Query Frame = 2

Query:   53 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINR---SPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD 418
            EE +  LS  QF + +  GTEP  TG       DG Y+C  C   L+ S TK+DSGCGWP+FYE +     R         +R EI C  C  H+GHVF       PT ER+CVNS S++F  G+
Sbjct:    8 EELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDG--PQPTGERYCVNSASLRFTDGE 130

The following BLAST results are available for this feature:

BLAST of CK937170 vs. ExPASy Swiss-Prot

BLAST of CK937170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209


Match Name	E-value	Identity	Description
MSRB_ECOL5	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECOHS	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECODH	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECOBW	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECO8A	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECO7I	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECO5E	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECO57	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECO55	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]
MSRB_ECO27	7.997e-20	42.40	Peptide methionine sulfoxide reductase msrB OS=Esc...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004513_D12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_D12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937170 ID=CK937170; Name=CK937170; organism=Citrus sinensis; type=EST; length=627bp
GGGGGAAACAAACCCCATGACNNNAGCAGCAGATTCCGTTCAGAAAACCG
AGGAAGAATGGCGGGCCATTCTCTCCCCCGAGCAGTTTAGGATTCTACGC
CAGAAAGGAACCGAGCCGCGAGGAACTGGGGAGTACAACAAGTTGTATGC
GGATGGGTTTTACAACTGTGCTGGCTGTGGAACTGCGCTTTATAAGTCTG
TCACCAAATTCGATTCTGGATGTGGGTGGCCAGCTTTCTATGAAGGTCTT
CCTGGAGCCATAAATCGCTCCCCTGATCCTGATGGAAGGAGAACCGAGAT
AACTTGTGCTGCTTGCGGGGGTCACATGGGTCACGTCTTCAAAGGGGAGG
GATTCAAAACGCCTACAGATGAACGCCACTGTGTCAATAGTGTTTCAATT
AAGTTTATTCCAGGTGATGCTCCTGCTTCATCATGAAGAATGTAAGACTG
TCATGGGGTTGTTGAATAAGATTTGACTGTTTGTCACTTCTGCCAATTGT
TTTTGGCTTTAATGTCCTAGACATGGTGTTGTTTGTATAATTATGACGCG
GCCAATATTAGCCTATGCCATAGTATAAACCACTTTGTTTGGTTTGCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA