CK937166

Overview
NameCK937166
Unique NameCK937166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_ACAM1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acaryochloris marina (strain MBIC 11017) GN=fabZ PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.920e-31
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFGI 534
            T   I +I+++LPHR+PFLLVDR+I+Y     AV IKNVT+N+ FF GHFP RP+MPGVL+VEAMAQVGG+V+ Q     S + F F GIDKVR R+SV+ GD LV+    + L +KRF +
Sbjct:   13 TTFMIEEIQELLPHRYPFLLVDRIIDYKESERAVGIKNVTMNEEFFQGHFPGRPLMPGVLIVEAMAQVGGIVLAQLPDIPSGKLFVFTGIDKVRIRRSVVPGDQLVITAEFLSLKRKRFAM 133          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPX ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH8102) GN=fabZ PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.278e-31
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFG 531
            V+   QI  +LPHR+PF LVDRVI + PGVSA  IKNVT+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+ V+ GD LV+   L+ L +KRFG
Sbjct:   15 VLTSEQIAGLLPHRYPFALVDRVIAHEPGVSATGIKNVTVNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLVIHCELLSLKRKRFG 132          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: LPXZ_CHLTE (Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidum GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.531e-31
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQK 522
            + DIN I++ILPHR+PFLL+D+++E+      V+IKNVT+N+ FF GHFP  PIMPGVL++EAMAQ GG++ML  +        FF GIDK RFRK V+ GDTLV+   +  +++
Sbjct:  323 IFDINAIQNILPHRYPFLLIDKIVEFKLDEKIVSIKNVTMNEPFFQGHFPGNPIMPGVLIIEAMAQTGGIMMLNGKENIKESVVFFMGIDKARFRKPVLPGDTLVIEAVMTNMRR 437          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH7803) GN=fabZ PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.531e-31
Identity = 70/120 (58.33%), Postives = 91/120 (75.83%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQK-RFG 531
            V++  QI  +LPHR+PF LVDRV+E+ PG  AVAIKNVT+N+  F GHFPDRP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+ V+ GD L +   L+ L++ RFG
Sbjct:    6 VLNAEQIMGLLPHRYPFALVDRVLEHVPGEKAVAIKNVTLNEPQFQGHFPDRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLRISCELLSLKRQRFG 123          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNR3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain RCC307) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.622e-30
Identity = 69/124 (55.65%), Postives = 91/124 (73.39%), Query Frame = 1
Query:  166 AFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQK-RFG 531
            A   +M   QI ++LPHR+PF LVDRV+E+ PG  AVAIKN+T+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+ V+ GD L +   L+ L++ RFG
Sbjct:    7 AHSPLMSSEQIMNLLPHRYPFALVDRVLEHEPGKRAVAIKNITLNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLRITCELLSLKRQRFG 128          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNP2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.622e-30
Identity = 61/114 (53.51%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  187 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF-FAGIDKVRFRKSVIAGDTLVMRMTLVKLQKR 525
            + +I+ +LPHR+PF LVDR++EY PG  AV +KN+T N+  F GH P+ PIMPGVLMVEAMAQVGG ++ Q  + G  ++FF FAGIDKVRFR+ V+ GD L+M + ++ ++ +
Sbjct:   15 VEEIQKLLPHRYPFSLVDRILEYIPGEKAVGLKNITFNEPHFQGHIPNHPIMPGVLMVEAMAQVGGFILTQ--MPGMEDSFFAFAGIDKVRFRRPVVPGDQLIMTVEVITVKAK 126          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_DESRM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfotomaculum reducens (strain MI-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.730e-30
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            ++DIN I+ ILPHR+PFLLVDR++E   G   V IKNVT N+ FFPGHFP  P+MPGVL++EAMAQVG + +L       R    FAGIDK RFR+ V+ GDTL + + ++KL+   G
Sbjct:    1 MLDINAIQQILPHRYPFLLVDRILEMEEGKRVVGIKNVTANEPFFPGHFPGYPVMPGVLVIEAMAQVGAVAILSMPAYAGR-IALFAGIDKARFRRQVVPGDTLRIEVEVLKLRGTIG 117          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_CARHZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.178e-30
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFGIA 537
            + DI +I +ILPHR+PFLLVD+++E  PG  AV IKNVTIN+ FF GHFP RPIMPGVL++EAMAQVG + +L  E    +    FAGID  RFRK V+ GD +V  + L+K++   G A
Sbjct:    5 IKDITEIMNILPHRYPFLLVDKILEVVPGEKAVGIKNVTINEPFFQGHFPGRPIMPGVLLLEAMAQVGAVAILTDERYAGKLP-MFAGIDGARFRKPVLPGDQVVFEVELLKIKGSLGKA 123          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: LPXZ_PORGI (Bifunctional enzyme lpxC/fabZ OS=Porphyromonas gingivalis GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.054e-29
Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFGIA 537
            +MDIN+I+++LPHR+PFLLVD++IE  P    V +K+V+ N+ FFPGHFP  P+MPGVL VEAMAQVGGL++L      S  + +F  IDKV+FR+ V+ GDTLV ++ ++  + R G+A
Sbjct:  318 IMDINRIKELLPHRYPFLLVDKIIEVGPDY-IVGVKSVSGNEPFFPGHFPGEPVMPGVLQVEAMAQVGGLLVLNTLTEPSSYSTYFLMIDKVKFRRKVVPGDTLVFKLRMIS-EIRRGVA 435          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9311) GN=fabZ PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.054e-29
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKL-QKRFG 531
            V++  QI  +LPHR+PF LVDRV+E+ PG  AVA+KNVT N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+ V+ GD L +   L+ L +KRFG
Sbjct:   13 VLNAEQIMGLLPHRYPFALVDRVLEHVPGERAVALKNVTFNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLRITCELLSLKRKRFG 130          
The following BLAST results are available for this feature:
BLAST of CK937166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_ACAM11.920e-3156.20(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNPX4.278e-3159.17(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_CHLTE9.531e-3152.17Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidu... [more]
FABZ_SYNPW9.531e-3158.33(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNR33.622e-3055.65(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNP23.622e-3053.51(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DESRM4.730e-3054.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CARHZ6.178e-3055.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_PORGI1.054e-2952.50Bifunctional enzyme lpxC/fabZ OS=Porphyromonas gin... [more]
FABZ_SYNS31.054e-2957.50(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_D08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937166 ID=CK937166; Name=CK937166; organism=Citrus sinensis; type=EST; length=537bp
GATACAAANNNNNNNNCCCACAACNNNNNNNNCATCCAATTTGACAAGAA
GAAGAATCAACAACAACAGCGGCACCAACGACATGCTCGTTTCACCACAT
TTTGTTCTTTGGACGCTGAACCCAAAGATCCCATCGAAGATAAACCCATC
GAACTTCGGTACCAGGCATTTCCTACAGTGATGGACATTAACCAGATTCG
TGACATTTTGCCACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTG
AATACAATCCAGGAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAAT
GATAACTTCTTTCCTGGCCATTTTCCTGATAGGCCAATTATGCCCGGTGT
TCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAAC
CAGAAGTGGGAGGCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGATAAA
GTAAGATTCAGGAAATCAGTGATTGCAGGTGACACTTTGGTCATGAGAAT
GACACTTGTCAAGCTACAGAAACGCTTCGGAATAGCA
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