CK937166

Overview
NameCK937166
Unique NameCK937166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SHESM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella sp. (strain MR-4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.748e-27
Identity = 60/121 (49.59%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  181 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFGI 534
            MDI +I   LPHR+PFLL+DRV++Y PG S  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGID  RFR+ V  GD +   + ++K ++  G+
Sbjct:    8 MDITEILKYLPHRYPFLLIDRVLDYTPGESLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAFKTMSDDVPPPGVLYYFAGIDNARFRRVVEPGDQIHFDVKMIKERRGIGV 128          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_LARHH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Laribacter hongkongensis (strain HLHK9) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.748e-27
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  178 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN---FFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            V+DI  I  +LPHR+PFLLVDRV+E   G    AIKNVT N+ FF GHF   P+MPGVL++EA+AQ  G++ ++   G  R+    +FF GID  RF++ VI GDTLV  + ++++ +  G
Sbjct:    7 VIDIRGIMKMLPHRYPFLLVDRVLEIEEGKRIKAIKNVTANEQFFVGHFEQYPVMPGVLIIEALAQAAGILAIKTHDGEVRQENALYFFVGIDNARFKRQVIPGDTLVFEVEMLRVSRGIG 127          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_EXIS2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.748e-27
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = 1
Query:  187 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            I QI++++PHR+PFLLVDR++E   G  AV IKNVT N+ FF GHFPD  +MPGVL+VEA+AQVG   +L+ E    +   FFAGI+  RF++ V+ GD L + + L KL+   G
Sbjct:    4 IEQIKEVIPHRYPFLLVDRILEVEEGKRAVGIKNVTANEEFFNGHFPDYNVMPGVLIVEALAQVGAFAVLKMEQNQGK-LAFFAGIENCRFKRQVVPGDQLRLEVELTKLRGPIG 117          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_AZOSE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Azoarcus sp. (strain EbN1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.895e-27
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  181 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQK 522
            MDIN+I   LPHR+PFLLVDRV+E   G   +A+KNVT+N+ FFPGHFP  P+MPGVL+VEAMAQ   L+  +       EN   +FAGID VRF++ V+ GD L+  + + + ++
Sbjct:    1 MDINEILQYLPHRYPFLLVDRVLEIEEGKRILALKNVTMNEPFFPGHFPHHPVMPGVLIVEAMAQAAALLSFKSMGVKPDENSVVYFAGIDNVRFKRPVVPGDQLLFDVVITQSKR 116          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_SYNWW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=fabZ PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.393e-27
Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  181 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            ++  +I  ILPHR+PFLLVDR+IE  PG  AV IKN+++N+ FFPGHFP  P+MPGVLM+EAMAQVG   +L  E    R   + AG+D++RF++  + GD+L++      ++   G
Sbjct:    6 LNTEEIMKILPHRYPFLLVDRIIELLPGERAVGIKNLSVNEPFFPGHFPGHPVMPGVLMIEAMAQVGACAILCDEKYQGRLG-YLAGVDRIRFKRMAVPGDSLLITTEFTAIKGNIG 121          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_STAES ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.393e-27
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            T+ D NQI+ I+PHR PFLL+D+++EY  G   V +K V+ N+ FF GHFP+  +MPGVL+ EA+AQ G + ML  E    +    FAGIDK RF+K V+ GDTL++ + + K++   G
Sbjct:    3 TIFDYNQIKQIIPHRQPFLLIDKIVEYEEGKRCVGLKQVSGNEPFFQGHFPNYAVMPGVLITEALAQTGAVAMLNSEENKGK-IALFAGIDKCRFKKQVVPGDTLMLEVEITKIKGPIG 120          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_STAEQ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.393e-27
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            T+ D NQI+ I+PHR PFLL+D+++EY  G   V +K V+ N+ FF GHFP+  +MPGVL+ EA+AQ G + ML  E    +    FAGIDK RF+K V+ GDTL++ + + K++   G
Sbjct:    3 TIFDYNQIKQIIPHRQPFLLIDKIVEYEEGKRCVGLKQVSGNEPFFQGHFPNYAVMPGVLITEALAQTGAVAMLNSEENKGK-IALFAGIDKCRFKKQVVPGDTLMLEVEITKIKGPIG 120          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_STAAW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Staphylococcus aureus (strain MW2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.393e-27
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            T+ D NQI+ I+PHR PFLL+D+V+EY  G   VAIK V+ N+ FF GHFP+  +MPGVL+ EA+AQ G + +L  E    +    FAGIDK RF++ V+ GDTL + + + K++   G
Sbjct:    3 TIFDYNQIKQIIPHRQPFLLIDKVVEYEEGQRCVAIKQVSGNEPFFQGHFPEYAVMPGVLITEALAQTGAVAILNSEENKGK-IALFAGIDKCRFKRQVVPGDTLTLEVEITKIKGPIG 120          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_STAAT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.393e-27
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            T+ D NQI+ I+PHR PFLL+D+V+EY  G   VAIK V+ N+ FF GHFP+  +MPGVL+ EA+AQ G + +L  E    +    FAGIDK RF++ V+ GDTL + + + K++   G
Sbjct:    3 TIFDYNQIKQIIPHRQPFLLIDKVVEYEEGQRCVAIKQVSGNEPFFQGHFPEYAVMPGVLITEALAQTGAVAILNSEENKGK-IALFAGIDKCRFKRQVVPGDTLTLEVEITKIKGPIG 120          
BLAST of CK937166 vs. ExPASy Swiss-Prot
Match: FABZ_STAAS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Staphylococcus aureus (strain MSSA476) GN=fabZ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.393e-27
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  175 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKSVIAGDTLVMRMTLVKLQKRFG 531
            T+ D NQI+ I+PHR PFLL+D+V+EY  G   VAIK V+ N+ FF GHFP+  +MPGVL+ EA+AQ G + +L  E    +    FAGIDK RF++ V+ GDTL + + + K++   G
Sbjct:    3 TIFDYNQIKQIIPHRQPFLLIDKVVEYEEGQRCVAIKQVSGNEPFFQGHFPEYAVMPGVLITEALAQTGAVAILNSEENKGK-IALFAGIDKCRFKRQVVPGDTLTLEVEITKIKGPIG 120          
The following BLAST results are available for this feature:
BLAST of CK937166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SHESM3.748e-2749.59(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LARHH3.748e-2747.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_EXIS23.748e-2751.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_AZOSE4.895e-2750.86(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNWW6.393e-2747.86(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STAES6.393e-2747.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STAEQ6.393e-2747.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STAAW6.393e-2747.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STAAT6.393e-2747.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STAAS6.393e-2747.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_D08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937166 ID=CK937166; Name=CK937166; organism=Citrus sinensis; type=EST; length=537bp
GATACAAANNNNNNNNCCCACAACNNNNNNNNCATCCAATTTGACAAGAA
GAAGAATCAACAACAACAGCGGCACCAACGACATGCTCGTTTCACCACAT
TTTGTTCTTTGGACGCTGAACCCAAAGATCCCATCGAAGATAAACCCATC
GAACTTCGGTACCAGGCATTTCCTACAGTGATGGACATTAACCAGATTCG
TGACATTTTGCCACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTG
AATACAATCCAGGAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAAT
GATAACTTCTTTCCTGGCCATTTTCCTGATAGGCCAATTATGCCCGGTGT
TCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAAC
CAGAAGTGGGAGGCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGATAAA
GTAAGATTCAGGAAATCAGTGATTGCAGGTGACACTTTGGTCATGAGAAT
GACACTTGTCAAGCTACAGAAACGCTTCGGAATAGCA
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