CK937140

Overview
NameCK937140
Unique NameCK937140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.455e-18
Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  126 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 587
            K ++ P  P++ ER+  E  L+  YGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+  + G+  +   AR  I   H+ V    V+ PS+ V V  +  IEF  TSP
Sbjct:    8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161          
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.430e-18
Identity = 51/159 (32.08%), Postives = 89/159 (55.97%), Query Frame = 3
Query:  126 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 587
            K +  P  P++K R+D E  LV +YGLR K+ +W+    L + R+ AR LL +       ++   I + + +++++   G L+E   KL+ VLAL V++ +ERRLQT++ + G A SI  AR  I   HI +  + + +P ++V    +  + + + SP
Sbjct:    9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166          
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.453e-17
Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  114 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 587
            R   K +  P  P+  ER+  E +L+ +YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V K G+A++   AR+ +   HI +  + +N PS+VV    +  I F  +SP
Sbjct:    5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159          
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.184e-17
Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  126 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 572
            K +  P  P+  +R+  E RL  +YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LV K G++ +   AR+ +   HI +  + +N P  +V    +++I+F
Sbjct:    9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154          
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  177 ELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 542
            ELR++  Y L+ + E  R       +R  AR L  L E++P R+    ALL +++  G L  ++  L+   +++  +F  RRL TL+LK  MA+ +  A   + Q H+RVG  +V  P+F+V
Sbjct:   30 ELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMG-LVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150          
The following BLAST results are available for this feature:
BLAST of CK937140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS4_NATPD6.455e-1836.7730S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS4_UNCMA8.430e-1832.0830S ribosomal protein S4P OS=Uncultured methanogen... [more]
RS4_METS32.453e-1736.0830S ribosomal protein S4P OS=Methanobrevibacter sm... [more]
RS4_METST4.184e-1733.5630S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
IMP3_MOUSE5.851e-1133.61U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004513_H03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0003_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937140 ID=CK937140; Name=CK937140; organism=Citrus sinensis; type=EST; length=778bp
GGGGGGCCTNNNCACGCNNNTTGCTTAGGCTTTTACAAAGATCGCAGAGA
GAGAGAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCA
CGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTC
CCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGGCTTGTGGGAGAGTAT
GGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCATTGAGCCG
CATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCAC
GTCGTATTTTCGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTACGGC
TTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGT
GGAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGCTCAAGAGTGGCA
TGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATT
AGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGA
TTCCCAGAAGCACATTGAATTCTCACTCACAAGTCCATTCGGAGGTGGGC
GCCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCC
GCAGGTGGAGATGGGGATGAAGAGGATGAAGAATAAATTACCTGTGTGAA
CAGATAGTTTTTTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAG
TGGACTTATCTTCTCTAAGTTTTATGTT
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