CK937140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.455e-18 Identity = 57/155 (36.77%), Postives = 82/155 (52.90%), Query Frame = 3 Query: 126 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 587 K ++ P P++ ER+ E L+ YGL K ELWR Q L R AR L+ + + E G L R+ R G L++ ++ LD +L+L V + LERRLQT+ + G+ + AR I H+ V V+ PS+ V V + IEF TSP Sbjct: 8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.430e-18 Identity = 51/159 (32.08%), Postives = 89/159 (55.97%), Query Frame = 3 Query: 126 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 587 K + P P++K R+D E LV +YGLR K+ +W+ L + R+ AR LL + ++ I + + +++++ G L+E KL+ VLAL V++ +ERRLQT++ + G A SI AR I HI + + + +P ++V + + + + SP Sbjct: 9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.453e-17 Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = 3 Query: 114 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 587 R K + P P+ ER+ E +L+ +YGL+ K+E+W+ + R AR LL D + E LL + R G L E L+ VL LTVE+ L RRLQT+V K G+A++ AR+ + HI + + +N PS+VV + I F +SP Sbjct: 5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.184e-17 Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 3 Query: 126 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 572 K + P P+ +R+ E RL +YGL+ K+E+W+ + + R R AR +L +D R + + LL + R GF+ + KL+ VL L VE+ L RRLQ+LV K G++ + AR+ + HI + + +N P +V +++I+F Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
BLAST of CK937140 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11 Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 177 ELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVLKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 542 ELR++ Y L+ + E R +R AR L L E++P R+ ALL +++ G L ++ L+ +++ +F RRL TL+LK MA+ + A + Q H+RVG +V P+F+V Sbjct: 30 ELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMG-LVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150 The following BLAST results are available for this feature:
BLAST of CK937140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937140 ID=CK937140; Name=CK937140; organism=Citrus sinensis; type=EST; length=778bpback to top |