EY665855

Overview
NameEY665855
Unique NameEY665855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.278e-16
Identity = 66/221 (29.86%), Postives = 94/221 (42.53%), Query Frame = 2
Query:    5 EPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIE----------------------------KW-GLENEGISRSR--DHPSVVEVI-----------GXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLII 541
            EP +  MN VLS +A DYP ++   YLSDD GA I    + E  KFA  W+PFC++  I+   PE+YF         S   EF  +   +  +Y EFK R+    E                            +W G   E I   R   H  +V+V+                           ++P+LVYV+R K P++ HN KAGALN  + +S ++
Sbjct:  182 EPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFELEAPSYTGSAQEEFKNDSRIVHLEYDEFKVRLEALPETIRKRSDVYNSMKTDQGAPNATWMANGTQWPGTWIEPIENHRKGHHAGIVKVVLDHPIRGHNLSLKDSTGNNLNFNATDVRIPMLVYVSRGKNPNYDHNKKAGALNAQLRASALL 402          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.241e-15
Identity = 66/221 (29.86%), Postives = 94/221 (42.53%), Query Frame = 2
Query:    5 EPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIE----------------------------KW-GLENEGISRSR--DHPSVVEVI-----------GXXXXXXXXXXXXXXXKMPLLVYVAREKRPSHPHNFKAGALNVLV*SSLII 541
            EP +  MN VLS +A DYP ++   YLSDD GA I    + E  KFA  W+PFC++  I+   PE+YF         S   EF  +   +  +Y EFK R+    E                            +W G   E I   R   H  +V+V+                           ++P+LVYV+R K P++ HN KAGALN  + +S ++
Sbjct:  182 EPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFELEAPSYTGSAPEEFKNDSRIVHLEYDEFKVRLEALPETIRKRSDVYNSMKTDQGAPNATWMANGTQWPGTWIEPIENHRKGHHAGIVKVVLDHPIRGHNLSLKDSTGNNLNFNATDVRIPMLVYVSRGKNPNYDHNKKAGALNAQLRASALL 402          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 47/137 (34.31%), Postives = 77/137 (56.20%), Query Frame = 2
Query:    5 EPTVEVMNTVLSAMALDYPP--EKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGD-GDSGNAEFIVEREKIKEKYTEFKERVTRAIEKWGLENEGIS--------RSRDHPSVVE 382
            EP +  +NTVLS +ALDYP   E+L  Y+SDDG + +T   +REA  FA +W+PFC+R+G+    P  YFS   + + G   + +F+ +   +K++Y +   R+    E+  L + G            R+HP++V+
Sbjct:  149 EPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIKNTDERSLLRHGGGEFFAEFLNVERRNHPTIVK 285          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 47/137 (34.31%), Postives = 77/137 (56.20%), Query Frame = 2
Query:    5 EPTVEVMNTVLSAMALDYPP--EKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYFSDPENGD-GDSGNAEFIVEREKIKEKYTEFKERVTRAIEKWGLENEGIS--------RSRDHPSVVE 382
            EP +  +NTVLS +ALDYP   E+L  Y+SDDG + +T   +REA  FA +W+PFC+R+G+    P  YFS   + + G   + +F+ +   +K++Y +   R+    E+  L + G            R+HP++V+
Sbjct:  149 EPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIKNTDERSLLRHGGGEFFAEFLNVERRNHPTIVK 285          
BLAST of EY665855 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.047e-15
Identity = 58/212 (27.36%), Postives = 88/212 (41.51%), Query Frame = 2
Query:    5 EPTVEVMNTVLSAMALDYPPEKLHVYLSDDGGASITLLGMREAWKFARSWLPFCKRFGIKTICPEAYF-SDPENGDGDSGNAEFIVEREKIKEKYTEFKERVTRAIEKWGLENEGI------------------------------SRSRDHPSVVEVIGXXXXXXXXXXXXXXXKMPL-----------LVYVAREKRPSHPHNFKAGALN 514
            EP +  MN++LS +A DYP ++   YLSDDG +     G+ E  +FA  W+PFC++  ++   PE+YF +      G +   EF  +R  ++ +Y EFK R+          +E                                 +   H  +V+V+                  PL           LVY+AREKRP + H  KAGA+N
Sbjct:  166 EPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYFAAKAAPYAGPALPEEFFGDRRLVRREYEEFKARLDALFTDIPQRSEASVGNANTKGAKATLMADGTPWPGTWTEPAENHKKGQHAGIVKVMLSHPGEEPQLGMPASSGHPLDFSAVDVRLPILVYIAREKRPGYDHQKKAGAMN 377          
The following BLAST results are available for this feature:
BLAST of EY665855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF3_ORYSI7.278e-1629.86Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ1.241e-1529.86Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLH2_ORYSJ3.612e-1534.31Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI3.612e-1534.31Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLF9_ORYSJ8.047e-1527.36Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665855 ID=EY665855; Name=EY665855; organism=Citrus sinensis; type=EST; length=869bp
TAAAGAGCCAACTGTGGAGGTAATGAATACGGTTTTGTCAGCTATGGCGC
TTGATTATCCGCCAGAGAAGCTGCATGTTTACCTTTCAGACGATGGAGGT
GCTTCTATAACTTTGCTTGGTATGAGGGAAGCTTGGAAGTTTGCAAGATC
GTGGCTTCCGTTTTGTAAGAGGTTTGGGATCAAAACAATATGCCCTGAAG
CTTATTTTTCTGATCCAGAGAATGGTGATGGTGACTCTGGAAATGCTGAG
TTCATTGTTGAGAGGGAAAAGATTAAGGAAAAATACACTGAGTTCAAGGA
ACGGGTAACGAGAGCCATTGAAAAATGGGGGCTAGAGAACGAAGGCATTT
CCAGAAGTCGAGATCATCCTTCTGTGGTTGAGGTGATAGGAGAAAACGAT
AATGAAGCAGCGAATGAGGAACAACAAATGAATAATAAGATGCCTCTCCT
TGTCTATGTTGCTCGCGAGAAAAGGCCTTCTCATCCACACAATTTCAAGG
CTGGAGCCTTAAACGTTCTTGTATGATCTTCTCTAATCATTCACACTCAC
ACACACATGGTGCATAATTTAATTGCATGCATATGCTTAATAGAAGCTGT
TGTTGATGTTGTAGCTTCGGGTTTCCGGGGGAATGAGCAACTCTCCCTAT
ATATTGATGCTAGACTGGGGCATGGTATTGCATGGACCCACTTTCGGGTT
AGGCAAGCCCTTGTGTTTCCCCCTTTGTTCCCAAAATCCTCTTCCTCCGT
TACCTTTCGTTCAGTTTCCCCCAAAAATTTTCTTAAAATTCCTCCCCGGA
TTGGTATTTTTTGGACCCCCCCCGTCCCCAAATTTTTTTCTTGGGGGAAT
GACCCTTATTTGAACCCCC
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