CK937093 | Citrus Genome Database

Overview


Name	CK937093
Unique Name	CK937093
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	825

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_NASOF (Photosystem I assembly protein ycf4 OS=Nasturtium officinale GN=ycf4 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.078e-33
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRFLMKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFLMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_LEPVR (Photosystem I assembly protein ycf4 OS=Lepidium virginicum GN=ycf4 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.078e-33
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRFLMKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFLMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_DRANE (Photosystem I assembly protein ycf4 OS=Draba nemorosa GN=ycf4 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.078e-33
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRFLMKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFLMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_ARAHI (Photosystem I assembly protein ycf4 OS=Arabis hirsuta GN=ycf4 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.078e-33
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRFLMKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFLMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_OLIPU (Photosystem I assembly protein ycf4 OS=Olimarabidopsis pumila GN=ycf4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRF MKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFFMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_CRUWA (Photosystem I assembly protein ycf4 OS=Crucihimalaya wallichii GN=ycf4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRF MKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFFMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_BARVE (Photosystem I assembly protein ycf4 OS=Barbarea verna GN=ycf4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRF MKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFFMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_ARATH (Photosystem I assembly protein ycf4 OS=Arabidopsis thaliana GN=ycf4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRIFLRF MKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIFLRFFMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_CAPBU (Photosystem I assembly protein ycf4 OS=Capsella bursa-pastoris GN=ycf4 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.898e-33
Identity = 72/84 (85.71%), Postives = 74/84 (88.10%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK RRIFLRF MKDIQSIRIEVKEG+ ARRVLY+E RG GAIPL RTDEN T REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKTRRIFLRFFMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEVF 184

[Close]

BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_CUSEX (Photosystem I assembly protein ycf4 OS=Cuscuta exaltata GN=ycf4 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.347e-32
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 2

Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPG NRRIFLRFL+KDI+S+RIEV+EGIYA RVLY++ RG  AIPL RTDENLTP EIE+KAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGINRRIFLRFLLKDIRSVRIEVEEGIYAGRVLYMDIRGQRAIPLTRTDENLTPGEIEKKAAELAYFLRVPIEVF 184

The following BLAST results are available for this feature:

BLAST of CK937093 vs. ExPASy Swiss-Prot

BLAST of CK937093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
YCF4_NASOF	2.078e-33	86.90	Photosystem I assembly protein ycf4 OS=Nasturtium ...	[more]
YCF4_LEPVR	2.078e-33	86.90	Photosystem I assembly protein ycf4 OS=Lepidium vi...	[more]
YCF4_DRANE	2.078e-33	86.90	Photosystem I assembly protein ycf4 OS=Draba nemor...	[more]
YCF4_ARAHI	2.078e-33	86.90	Photosystem I assembly protein ycf4 OS=Arabis hirs...	[more]
YCF4_OLIPU	6.047e-33	85.71	Photosystem I assembly protein ycf4 OS=Olimarabido...	[more]
YCF4_CRUWA	6.047e-33	85.71	Photosystem I assembly protein ycf4 OS=Crucihimala...	[more]
YCF4_BARVE	6.047e-33	85.71	Photosystem I assembly protein ycf4 OS=Barbarea ve...	[more]
YCF4_ARATH	6.047e-33	85.71	Photosystem I assembly protein ycf4 OS=Arabidopsis...	[more]
YCF4_CAPBU	7.898e-33	85.71	Photosystem I assembly protein ycf4 OS=Capsella bu...	[more]
YCF4_CUSEX	1.347e-32	82.14	Photosystem I assembly protein ycf4 OS=Cuscuta exa...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004514_D10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_D10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK937093 ID=CK937093; Name=CK937093; organism=Citrus sinensis; type=EST; length=825bp
NCGGCCGGGATACTTATATACAATTATNNNAGTATACTTAATATACATTT
ATATACGAATTAGAATATGATAATAATTAGAATATGAATTCTAATTATTA
TAGGATATCCTTATACCAATAACAGGTACAAATATTAAATCGAGGTACCC
TTTCTATGACAATTCTCAACAGCTTTCCCTCTATTTTTGTGCCTTTAGTG
GGCCTAGTATTTCCGGCAATGGCAATGGCTTCGTTATTTCTTTATCTTGA
AAAAAATAAGATTTTGTAAATCCGATCGGATCAAGGTCAAATCTCGTCTA
GTTTTTTTCAAGACTTAGCGATGACGGATATCCATTTAGTAGAATAGTGT
GTATTTTTCGTTGGGGATTTCCTGGAAAAAATCGCCGCATCTTTCTACGA
TTCCTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTAT
TTATGCTCGTCGTGTCCTTTATATAGAAAGCAGAGGCTTGGGGGCCATTC
CCTTGAATCGTACTGATGAGAATTTGACTCCGCGAGAAATTGAGCAAAAG
GCTGCGGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGGATTTTGAAA
AATGAACTGAAGAATAAACGCTTTCTTAGCAGGAGGAAACCCCCACGAAT
CCATTTTTCTTTAGCAAAACGGACTTGATTGAAGTTTCTTCCGAACGACC
TGTTGGACCAAAGCAAACGTGTACGGAACAGCCATAATCTAAAACGAAAC
CCTTTTCTTTTATACTTTCTTTTGTCTTTACTACTGACCAAAGAATTGGA
TCTCATAAAATGAGGACTTTTCCGT